1vyi

Structure of the c-terminal domain of the polymerase cofactor of rabies virus: insights in function and evolution.

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

RNA POLYMERASE ALPHA SUBUNIT

Rabies virus CVS-11

UniProt P22363

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 GLYCEROL × 5 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RRPP_RABVC
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–112; UniProt 186–297

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id1vyi
Deposition date deposition_date2004-04-30
Structure title titleStructure of the c-terminal domain of the polymerase cofactor of rabies virus: insights in function and evolution.
Keywords keywordsTRANSFERASE, RABIES VIRUS, REPLICATION, TRANSCRIPTION, POLYMERASE, RNA-DIRECTED RNA POLYMERASE, PHOSPHORYLATION; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1vyi__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1vyi__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1vyi__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)15.97 Å
Rg (electron density)14.86 Å
Total Rg15.97 Å
Atom count916
Residues111
Excluded volume16409 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1vyi__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (3)

▼

6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1vyia_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.293 — Phosphoprotein M1, C-terminal domain
Superfamily Superfamily superfamilyd.293.1 — Phosphoprotein M1, C-terminal domain
Family Family familyd.293.1.1 — Phosphoprotein M1, C-terminal domain

CATH v4.4 (1 domains)

Domain ID domain_id1vyiA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily820 — Phosphoprotein, C-terminal domain
▶

7. Citations (1)