1xsk

Structure of a Family 31 alpha glycosidase glycosyl-enzyme intermediate

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Putative family 31 glucosidase yicI

Escherichia coli

UniProt P31434

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 6 SULFATE ION × 13 5(R)-fluoro-beta-D-xylopyranose × 4 3[N-MORPHOLINO]PROPANE SULFONIC ACID × 4 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 YICI_ECOLI
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–772; UniProt 1–772 作者链 B; PDB构建体 1–772; UniProt 1–772 作者链 C; PDB构建体 1–772; UniProt 1–772 作者链 D; PDB构建体 1–772; UniProt 1–772 作者链 E; PDB构建体 1–772; UniProt 1–772 作者链 F; PDB构建体 1–772; UniProt 1–772

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1xsk
沉积日期 deposition_date2004-10-19
结构标题 titleStructure of a Family 31 alpha glycosidase glycosyl-enzyme intermediate
关键词 keywordsbeta(8)alpha(8) barrel and beta sandwich domains, hydrolase; HYDROLASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1xsk__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1xsk__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1xsk__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)54.96 Å
Rg(电子密度)54.40 Å
总 Rg54.77 Å
原子数37513
残基数4638
排除体积661410 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1xsk__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (5)

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6. 折叠分类 (SCOP + CATH) 54 domains

SCOP 2.08 (30 domains)

结构域编号 domain_idd1xska1
类 Class classb — All beta proteins
折叠类型 Fold foldb.150 — Glycolsyl hydrolase family 31 C-terminal domain-like
超家族 Superfamily superfamilyb.150.1 — Glycolsyl hydrolase family 31 C-terminal domain
家族 Family familyb.150.1.1 — Glycolsyl hydrolase family 31 C-terminal domain
结构域编号 domain_idd1xska2
类 Class classb — All beta proteins
折叠类型 Fold foldb.30 — Supersandwich
超家族 Superfamily superfamilyb.30.5 — Galactose mutarotase-like
家族 Family familyb.30.5.11 — Glycosyl hydrolase family 31, N-terminal domain-like
结构域编号 domain_idd1xska3
类 Class classb — All beta proteins
折叠类型 Fold foldb.71 — Glycosyl hydrolase domain
超家族 Superfamily superfamilyb.71.1 — Glycosyl hydrolase domain
家族 Family familyb.71.1.4 — Glycosyl hydrolase family 31, domain 3
结构域编号 domain_idd1xska4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.13 — Glycosyl hydrolase family 31 catalytic domain
结构域编号 domain_idd1xska5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1xskb1
类 Class classb — All beta proteins
折叠类型 Fold foldb.150 — Glycolsyl hydrolase family 31 C-terminal domain-like
超家族 Superfamily superfamilyb.150.1 — Glycolsyl hydrolase family 31 C-terminal domain
家族 Family familyb.150.1.1 — Glycolsyl hydrolase family 31 C-terminal domain
结构域编号 domain_idd1xskb2
类 Class classb — All beta proteins
折叠类型 Fold foldb.30 — Supersandwich
超家族 Superfamily superfamilyb.30.5 — Galactose mutarotase-like
家族 Family familyb.30.5.11 — Glycosyl hydrolase family 31, N-terminal domain-like
结构域编号 domain_idd1xskb3
类 Class classb — All beta proteins
折叠类型 Fold foldb.71 — Glycosyl hydrolase domain
超家族 Superfamily superfamilyb.71.1 — Glycosyl hydrolase domain
家族 Family familyb.71.1.4 — Glycosyl hydrolase family 31, domain 3
结构域编号 domain_idd1xskb4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.13 — Glycosyl hydrolase family 31 catalytic domain
结构域编号 domain_idd1xskb5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1xskc1
类 Class classb — All beta proteins
折叠类型 Fold foldb.150 — Glycolsyl hydrolase family 31 C-terminal domain-like
超家族 Superfamily superfamilyb.150.1 — Glycolsyl hydrolase family 31 C-terminal domain
家族 Family familyb.150.1.1 — Glycolsyl hydrolase family 31 C-terminal domain
结构域编号 domain_idd1xskc2
类 Class classb — All beta proteins
折叠类型 Fold foldb.30 — Supersandwich
超家族 Superfamily superfamilyb.30.5 — Galactose mutarotase-like
家族 Family familyb.30.5.11 — Glycosyl hydrolase family 31, N-terminal domain-like
结构域编号 domain_idd1xskc3
类 Class classb — All beta proteins
折叠类型 Fold foldb.71 — Glycosyl hydrolase domain
超家族 Superfamily superfamilyb.71.1 — Glycosyl hydrolase domain
家族 Family familyb.71.1.4 — Glycosyl hydrolase family 31, domain 3
结构域编号 domain_idd1xskc4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.13 — Glycosyl hydrolase family 31 catalytic domain
结构域编号 domain_idd1xskc5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1xskd1
类 Class classb — All beta proteins
折叠类型 Fold foldb.150 — Glycolsyl hydrolase family 31 C-terminal domain-like
超家族 Superfamily superfamilyb.150.1 — Glycolsyl hydrolase family 31 C-terminal domain
家族 Family familyb.150.1.1 — Glycolsyl hydrolase family 31 C-terminal domain
结构域编号 domain_idd1xskd2
类 Class classb — All beta proteins
折叠类型 Fold foldb.30 — Supersandwich
超家族 Superfamily superfamilyb.30.5 — Galactose mutarotase-like
家族 Family familyb.30.5.11 — Glycosyl hydrolase family 31, N-terminal domain-like
结构域编号 domain_idd1xskd3
类 Class classb — All beta proteins
折叠类型 Fold foldb.71 — Glycosyl hydrolase domain
超家族 Superfamily superfamilyb.71.1 — Glycosyl hydrolase domain
家族 Family familyb.71.1.4 — Glycosyl hydrolase family 31, domain 3
结构域编号 domain_idd1xskd4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.13 — Glycosyl hydrolase family 31 catalytic domain
结构域编号 domain_idd1xskd5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1xske1
类 Class classb — All beta proteins
折叠类型 Fold foldb.150 — Glycolsyl hydrolase family 31 C-terminal domain-like
超家族 Superfamily superfamilyb.150.1 — Glycolsyl hydrolase family 31 C-terminal domain
家族 Family familyb.150.1.1 — Glycolsyl hydrolase family 31 C-terminal domain
结构域编号 domain_idd1xske2
类 Class classb — All beta proteins
折叠类型 Fold foldb.30 — Supersandwich
超家族 Superfamily superfamilyb.30.5 — Galactose mutarotase-like
家族 Family familyb.30.5.11 — Glycosyl hydrolase family 31, N-terminal domain-like
结构域编号 domain_idd1xske3
类 Class classb — All beta proteins
折叠类型 Fold foldb.71 — Glycosyl hydrolase domain
超家族 Superfamily superfamilyb.71.1 — Glycosyl hydrolase domain
家族 Family familyb.71.1.4 — Glycosyl hydrolase family 31, domain 3
结构域编号 domain_idd1xske4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.13 — Glycosyl hydrolase family 31 catalytic domain
结构域编号 domain_idd1xske5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1xskf1
类 Class classb — All beta proteins
折叠类型 Fold foldb.150 — Glycolsyl hydrolase family 31 C-terminal domain-like
超家族 Superfamily superfamilyb.150.1 — Glycolsyl hydrolase family 31 C-terminal domain
家族 Family familyb.150.1.1 — Glycolsyl hydrolase family 31 C-terminal domain
结构域编号 domain_idd1xskf2
类 Class classb — All beta proteins
折叠类型 Fold foldb.30 — Supersandwich
超家族 Superfamily superfamilyb.30.5 — Galactose mutarotase-like
家族 Family familyb.30.5.11 — Glycosyl hydrolase family 31, N-terminal domain-like
结构域编号 domain_idd1xskf3
类 Class classb — All beta proteins
折叠类型 Fold foldb.71 — Glycosyl hydrolase domain
超家族 Superfamily superfamilyb.71.1 — Glycosyl hydrolase domain
家族 Family familyb.71.1.4 — Glycosyl hydrolase family 31, domain 3
结构域编号 domain_idd1xskf4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.13 — Glycosyl hydrolase family 31 catalytic domain
结构域编号 domain_idd1xskf5
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags

CATH v4.4 (24 domains)

结构域编号 domain_id1xskA01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1760 — glycosyl hydrolase (family 31)
结构域编号 domain_id1xskA02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily80 — Glycosidases
结构域编号 domain_id1xskA03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskA04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskB01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1760 — glycosyl hydrolase (family 31)
结构域编号 domain_id1xskB02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily80 — Glycosidases
结构域编号 domain_id1xskB03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskB04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskC01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1760 — glycosyl hydrolase (family 31)
结构域编号 domain_id1xskC02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily80 — Glycosidases
结构域编号 domain_id1xskC03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskC04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskD01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1760 — glycosyl hydrolase (family 31)
结构域编号 domain_id1xskD02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily80 — Glycosidases
结构域编号 domain_id1xskD03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskD04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskE01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1760 — glycosyl hydrolase (family 31)
结构域编号 domain_id1xskE02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily80 — Glycosidases
结构域编号 domain_id1xskE03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskE04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskF01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1760 — glycosyl hydrolase (family 31)
结构域编号 domain_id1xskF02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily80 — Glycosidases
结构域编号 domain_id1xskF03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
结构域编号 domain_id1xskF04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1180 — Golgi alpha-mannosidase II
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