1y9g

Crystal structure of exo-inulinase from Aspergillus awamori complexed with fructose

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

No usable UniProt protein identity is available for this entry.

The relationship tables retain this entry's assembly and composition data, but cross-PDB links for the same protein cannot be established reliably without a unified protein identity.

Assembly Composition of the Current Entry

Assembly Physical composition Protein state 蛋白 / DNA / RNA / 其他Polymer Data consistency
1 Other combination Monomer 1 / 0 / 0 / 1 Consistent with protein count

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1y9g
Deposition date deposition_date2004-12-15
Structure title titleCrystal structure of exo-inulinase from Aspergillus awamori complexed with fructose
Keywords keywordsExo-inulinase, Aspergillus awamori, Glycoside hydrolase family 32, Crystallographic structure, Complex with fructose, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1y9g__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1y9g__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1y9g__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)24.01 Å
Rg (electron density)22.97 Å
Total Rg23.97 Å
Atom count4124
Residues517
Excluded volume72418 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1y9g__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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6. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1y9ga1
Class classb — All beta proteins
Fold Fold foldb.29 — Concanavalin A-like lectins/glucanases
Superfamily Superfamily superfamilyb.29.1 — Concanavalin A-like lectins/glucanases
Family Family familyb.29.1.19 — Glycosyl hydrolases family 32 C-terminal domain
Domain ID domain_idd1y9ga2
Class classb — All beta proteins
Fold Fold foldb.67 — 5-bladed beta-propeller
Superfamily Superfamily superfamilyb.67.2 — Arabinanase/levansucrase/invertase
Family Family familyb.67.2.3 — Glycosyl hydrolases family 32 N-terminal domain

CATH v4.4 (2 domains)

Domain ID domain_id1y9gA01
Class class2 — Mainly Beta
Architecture architecture115 — 5 Propeller
Topology topology10 — Tachylectin-2; Chain A
Homologous superfamily homologous superfamily20 — Glycosyl hydrolase domain; family 43
Domain ID domain_id1y9gA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily560 — Exo-inulinase; domain 1
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7. Citations (2)