1yce

Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus

Method: X-RAY DIFFRACTION

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1. 蛋白身份与相关结构 Protein Identity & Related Structures

当前条目没有可用的 UniProt 蛋白身份。

七张关系表仍保留该条目的 assembly 与组成信息，但缺少统一蛋白身份时，不能可靠建立跨 PDB 的同蛋白链接。

当前条目的 assembly 组成

Assembly	物理组成	蛋白状态	蛋白 / DNA / RNA / 其他聚合物	数据核对
1	蛋白同源多聚体	同源多聚体	11 / 0 / 0 / 0	与蛋白数一致
2	蛋白同源多聚体	同源多聚体	11 / 0 / 0 / 0	与蛋白数一致
3	蛋白同源多聚体	同源多聚体	11 / 0 / 0 / 0	与蛋白数一致
4	蛋白同源多聚体	同源多聚体	11 / 0 / 0 / 0	与蛋白数一致

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id	1yce
沉积日期 deposition_date	2004-12-22
结构标题 title	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
关键词 keywords	ATP Synthase, Na binding site, membrane protein; MEMBRANE PROTEIN
实验方法 method	X-RAY DIFFRACTION

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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1yce__assembly_3__model_1

Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1yce__assembly_3__model_1 | I(q)

100 个绘图点；横轴和纵轴均采用对数尺度。

1yce__assembly_3__model_1 | P(r) · Pending

P(r) 将按相同 assembly/model 分别计算和展示。

Rg（Guinier）	28.74 Å
Rg（电子密度）	27.75 Å
总 Rg	28.71 Å
原子数	6897
残基数	979
排除体积	127400 Å³
最大 q	0.500 Å⁻¹

Assembly	Model	结构单元	聚集说明	状态	CRYSOL	操作
1	1	`1yce__assembly_1__model_1`	undecameric （11）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
2	1	`1yce__assembly_2__model_1`	undecameric （11）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
3	1	`1yce__assembly_3__model_1`	undecameric （11）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
4	1	`1yce__assembly_4__model_1`	undecameric （11）	成功	4.1.3-1-20251215 (887e7ef)	查看下载

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

实体 1 Entity 1 polymer

描述 description	subunit c
分子量 formula_weight	8799.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	44

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v
原子数 atom_count	28101

MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGLLG

实体 2 Entity 2 non-polymer

描述 description	SODIUM ION
分子量 formula_weight	23.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	44

实体 3 Entity 3 non-polymer

描述 description	NONAN-1-OL
分子量 formula_weight	144.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	44

实体 4 Entity 4 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	513

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6. 折叠分类 (SCOP + CATH) 44 domains

CATH v4.4 (44 domains)

结构域编号 domain_id	1yceA01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceB01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceC01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceD01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceE01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceF01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceG01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceH01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceI01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceJ01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceK01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceL01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceM01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceN01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceO01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceP01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceQ01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceR01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceS01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceT01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceU01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceV01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycea01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceb01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycec01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yced01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycee01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycef01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceg01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceh01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycei01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycej01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycek01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycel01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycem01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycen01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceo01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycep01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceq01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycer01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yces01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycet01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1yceu01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

结构域编号 domain_id	1ycev01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	20 — F1FO ATP Synthase
同源超家族 H-superfamily homologous superfamily	10 — F1F0 ATP synthase subunit C

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晶胞边长 a length_a	147.700 Å
晶胞边长 b length_b	140.000 Å
晶胞边长 c length_c	153.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	118.40 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	88

空间群 space_group	P 1 21 1
空间群编号 int_tables_number	4
晶系 crystal_system	—

分辨率 resolution	2.400 Å
最低分辨率 resolution_low	10.000 Å
R 因子 r_factor	0.2028
R_work r_work	0.2006
R_free r_free	0.2460