Novosphingobium capsulatum
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | GLYCEROL × 2 water × 1 | Consistent with protein count |
| UniProt name | Q9ZNM8_9SPHN |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–723； UniProt 1–723 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 1yr2 |
| Deposition date deposition_date | 2005-02-02 |
| Structure title title | Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity |
| Keywords keywords | prolyl endopeptidase, mechanistic study, celiac sprue, HYDROLASE; HYDROLASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 29.41 Å |
| Rg (electron density) | 28.47 Å |
| Total Rg | 29.28 Å |
| Atom count | 5263 |
| Residues | 680 |
| Excluded volume | 93106 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d1yr2a1 |
| Class class | b — All beta proteins |
| Fold Fold fold | b.69 — 7-bladed beta-propeller |
| Superfamily Superfamily superfamily | b.69.7 — Peptidase/esterase 'gauge' domain |
| Family Family family | b.69.7.0 — automated matches |
| Domain ID domain_id | d1yr2a2 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.69 — alpha/beta-Hydrolases |
| Superfamily Superfamily superfamily | c.69.1 — alpha/beta-Hydrolases |
| Family Family family | c.69.1.0 — automated matches |
| Domain ID domain_id | d1yr2a3 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | 1yr2A01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| Topology topology | 50 — Rossmann fold |
| Homologous superfamily homologous superfamily | 1820 — Alpha/Beta hydrolase fold, catalytic domain |
| Domain ID domain_id | 1yr2A02 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 130 — 7 Propeller |
| Topology topology | 10 — Methylamine Dehydrogenase; Chain H |
| Homologous superfamily homologous superfamily | 120 — Prolyl oligopeptidase, N-terminal domain |