1ywh

crystal structure of urokinase plasminogen activator receptor

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Urokinase plasminogen activator surface receptor

Homo sapiens

UniProt Q9UMV0

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 16 其他聚合物 18 antagonist peptide × 8 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose × 4 alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose × 8 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 4 2-acetamido-2-deoxy-beta-D-glucopyranose × 11 SULFATE ION × 21 water × 16 与蛋白数一致
2 其他组合 异源复合物 蛋白 8 其他聚合物 8 antagonist peptide × 4 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose × 3 alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose × 4 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 SULFATE ION × 13 water × 8 与蛋白数一致
3 其他组合 异源复合物 蛋白 8 其他聚合物 10 antagonist peptide × 4 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose × 1 alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose × 4 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; × 4 2-acetamido-2-deoxy-beta-D-glucopyranose × 5 SULFATE ION × 8 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 UPAR_HUMAN
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–313; UniProt 23–335 作者链 C; PDB构建体 1–313; UniProt 23–335 作者链 E; PDB构建体 1–313; UniProt 23–335 作者链 G; PDB构建体 1–313; UniProt 23–335 作者链 I; PDB构建体 1–313; UniProt 23–335 作者链 K; PDB构建体 1–313; UniProt 23–335 作者链 M; PDB构建体 1–313; UniProt 23–335 作者链 O; PDB构建体 1–313; UniProt 23–335

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1ywh
沉积日期 deposition_date2005-02-18
结构标题 titlecrystal structure of urokinase plasminogen activator receptor
关键词 keywordsuPAR, three-finger fold, protein-peptide complex, HYDROLASE RECEPTOR; HYDROLASE RECEPTOR
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1ywh__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1ywh__assembly_2__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1ywh__assembly_2__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)36.21 Å
Rg(电子密度)35.42 Å
总 Rg35.87 Å
原子数8860
残基数1087
排除体积154040 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1ywh__assembly_1__model_1 hexadecameric (16) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1ywh__assembly_2__model_1 octameric (8) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
3 1 1ywh__assembly_3__model_1 octameric (8) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (9)

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6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd1ywha1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywha2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywha3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhc1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhc2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhc3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhe1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhe2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhe3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhg1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhg2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhg3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhi1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhi2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhi3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhk1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhk2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhk3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhm1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhm2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywhm3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywho1
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywho2
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors
结构域编号 domain_idd1ywho3
类 Class classg — Small proteins
折叠类型 Fold foldg.7 — Snake toxin-like
超家族 Superfamily superfamilyg.7.1 — Snake toxin-like
家族 Family familyg.7.1.3 — Extracellular domain of cell surface receptors

CATH v4.4 (24 domains)

结构域编号 domain_id1ywhA01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhA02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhA03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhC01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhC02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhC03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhE01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhE02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhE03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhG01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhG02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhG03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhI01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhI02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhI03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhK01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhK02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhK03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhM01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhM02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhM03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhO01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhO02
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
结构域编号 domain_id1ywhO03
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology60 — CD59
同源超家族 H-superfamily homologous superfamily10 — CD59
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7. 引用文献 (1)