2aaz

Cryptococcus neoformans thymidylate synthase complexed with substrate and an antifolate

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Thymidylate synthase

Filobasidiella neoformans

UniProt P45351

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID × 2 water × 2 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID × 2 water × 2 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID × 2 water × 2 Consistent with protein count
4 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID × 2 water × 2 Consistent with protein count
5 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 Consistent with protein count
6 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 Consistent with protein count
7 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 Consistent with protein count
8 Protein homooligomer Homooligomer Protein 2 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TYSY_CRYNE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–317; UniProt 1–317 Author chain B; PDBConstruct 1–317; UniProt 1–317 Author chain C; PDBConstruct 1–317; UniProt 1–317 Author chain D; PDBConstruct 1–317; UniProt 1–317 Author chain E; PDBConstruct 1–317; UniProt 1–317 Author chain F; PDBConstruct 1–317; UniProt 1–317 Author chain G; PDBConstruct 1–317; UniProt 1–317 Author chain H; PDBConstruct 1–317; UniProt 1–317 Author chain I; PDBConstruct 1–317; UniProt 1–317 Author chain J; PDBConstruct 1–317; UniProt 1–317 Author chain K; PDBConstruct 1–317; UniProt 1–317 Author chain L; PDBConstruct 1–317; UniProt 1–317 Author chain M; PDBConstruct 1–317; UniProt 1–317 Author chain N; PDBConstruct 1–317; UniProt 1–317 Author chain O; PDBConstruct 1–317; UniProt 1–317 Author chain P; PDBConstruct 1–317; UniProt 1–317

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2aaz
Deposition date deposition_date2005-07-14
Structure title titleCryptococcus neoformans thymidylate synthase complexed with substrate and an antifolate
Keywords keywordsMethyl transferase, Nucleotide biosynthesis, Transferase; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2aaz__assembly_1__model_2

Assembly 1 · Model 2 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2aaz__assembly_1__model_2 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2aaz__assembly_1__model_2 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)25.07 Å
Rg (electron density)23.80 Å
Total Rg24.70 Å
Atom count4968
Residues610
Excluded volume88319 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2aaz__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 2aaz__assembly_1__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 2aaz__assembly_1__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 2aaz__assembly_1__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 2aaz__assembly_2__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
2 2 2aaz__assembly_2__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
2 3 2aaz__assembly_2__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
2 4 2aaz__assembly_2__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 2aaz__assembly_3__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
3 2 2aaz__assembly_3__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
3 3 2aaz__assembly_3__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
3 4 2aaz__assembly_3__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 2aaz__assembly_4__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
4 2 2aaz__assembly_4__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
4 3 2aaz__assembly_4__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
4 4 2aaz__assembly_4__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 2aaz__assembly_5__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
5 2 2aaz__assembly_5__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
5 3 2aaz__assembly_5__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
5 4 2aaz__assembly_5__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 2aaz__assembly_6__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
6 2 2aaz__assembly_6__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
6 3 2aaz__assembly_6__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
6 4 2aaz__assembly_6__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
7 1 2aaz__assembly_7__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
7 2 2aaz__assembly_7__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
7 3 2aaz__assembly_7__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
7 4 2aaz__assembly_7__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
8 1 2aaz__assembly_8__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
8 2 2aaz__assembly_8__model_2 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
8 3 2aaz__assembly_8__model_3 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
8 4 2aaz__assembly_8__model_4 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 32 domains

SCOP 2.08 (16 domains)

Domain ID domain_idd2aaza_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazc_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazd_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aaze_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazf_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazg_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazh_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazi_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazj_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazk_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazl_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazm_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazn_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazo_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase
Domain ID domain_idd2aazp_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.117 — Thymidylate synthase/dCMP hydroxymethylase
Superfamily Superfamily superfamilyd.117.1 — Thymidylate synthase/dCMP hydroxymethylase
Family Family familyd.117.1.1 — Thymidylate synthase/dCMP hydroxymethylase

CATH v4.4 (16 domains)

Domain ID domain_id2aazA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazC00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazD00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazE00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazF00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazG00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazH00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazI00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazJ00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazK00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazL00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazM00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazN00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazO00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
Domain ID domain_id2aazP00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology572 — Thymidylate Synthase; Chain A
Homologous superfamily homologous superfamily10 — Thymidylate synthase/dCMP hydroxymethylase domain
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7. Citations (3)