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1WR1
The complex structure of Dsk2p UBA with ubiquitin
Deposited 2004-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
328–373(46 aa)
Fragment:C-TERMINAL UBA DOMAIN
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 6.8;298 K;Ionic strength (raw mmCIF value) 20mM potassium phosphate, 5mM potassium chloride
NMR sample composition
U-15N, 13C ubiquitin + DSK2-UBA complex (0.9mM) | 20mM Phosphate buffer (pH 6.8); 5mM potassium chloride; 1mM EDTA; 5% D2O
NMR sample composition
U-15N, 13C DSK2-UBA + ubiquitin complex (1.0mM) | 20mM Phosphate buffer (pH 6.8); 5mM potassium chloride; 1mM EDTA; 5% D2O
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Resolution not provided
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain G
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain H
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWB
Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 9
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain I
326–371(46 aa)
Fragment:UBA DOMAIN, RESIDUES 326-371
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;1.6 M TRISODIUM CITRATE PH 7.0
|
Resolution 2.30 Å
R-free 0.307
|
|
2BWF
Crystal structure of the UBL domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–75(75 aa)
Fragment:UBL DOMAIN, RESIDUES 1-75
|
Not recorded
|
FMT FORMIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;pH 7.00
|
Resolution 1.15 Å
R-free 0.195
|
|
2BWF
Crystal structure of the UBL domain of Dsk2 from S. cerevisiae
Deposited 2005-07-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–75(75 aa)
Fragment:UBL DOMAIN, RESIDUES 1-75
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;pH 7.00
|
Resolution 1.15 Å
R-free 0.195
|
|
3M63
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2
Deposited 2010-03-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–75(75 aa)
Fragment:UNP residues 1-75, Ubiquitin-like domain
|
Not recorded
|
1PE PENTAETHYLENE GLYCOL × 1
K POTASSIUM ION × 1
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.3;298 K;16-18% PEG 3500
200 mM Tripotassium citrate, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K
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Resolution 2.40 Å
R-free 0.270
|
|
4UN2
Crystal structure of the UBA domain of Dsk2 in complex with Ubiquitin
Deposited 2014-05-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
328–373(46 aa)
Fragment:UBA DOMAIN, RESIDUES 328-373
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5;0.2M MAGNESIUM CHLORIDE, 0.1M TRIS PH 8.5, 20% PEG 8000
|
Resolution 1.51 Å
R-free 0.196
|