2c39

RNase PH core of the archaeal exosome in complex with ADP

Method: X-RAY DIFFRACTION

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1. 蛋白身份与相关结构 Protein Identity & Related Structures

PROBABLE EXOSOME COMPLEX EXONUCLEASE 2

SULFOLOBUS SOLFATARICUS

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 × 3 （Q9UXC2） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 × 3 （Q9UXC2） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致
3	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 × 3 （Q9UXC2） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致
4	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 × 3 （Q9UXC2） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	ECX2_SULSO
Isoform	—
PDB实体	1
链与序列区间	作者链 A； PDB构建体 1–275； UniProt 1–275 作者链 C； PDB构建体 1–275； UniProt 1–275 作者链 E； PDB构建体 1–275； UniProt 1–275 作者链 G； PDB构建体 1–275； UniProt 1–275 作者链 I； PDB构建体 1–275； UniProt 1–275 作者链 K； PDB构建体 1–275； UniProt 1–275 作者链 M； PDB构建体 1–275； UniProt 1–275 作者链 O； PDB构建体 1–275； UniProt 1–275 作者链 Q； PDB构建体 1–275； UniProt 1–275 作者链 S； PDB构建体 1–275； UniProt 1–275 作者链 U； PDB构建体 1–275； UniProt 1–275 作者链 W； PDB构建体 1–275； UniProt 1–275

PROBABLE EXOSOME COMPLEX EXONUCLEASE 1

SULFOLOBUS SOLFATARICUS

UniProt Q9UXC2

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 × 3 （Q9UXC0） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 × 3 （Q9UXC0） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致
3	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 × 3 （Q9UXC0） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致
4	蛋白异源复合物	异源复合物	蛋白 6	PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 × 3 （Q9UXC0） ADENOSINE-5'-DIPHOSPHATE × 3	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	ECX1_SULSO
Isoform	—
PDB实体	2
链与序列区间	作者链 B； PDB构建体 1–248； UniProt 1–248 作者链 D； PDB构建体 1–248； UniProt 1–248 作者链 F； PDB构建体 1–248； UniProt 1–248 作者链 H； PDB构建体 1–248； UniProt 1–248 作者链 J； PDB构建体 1–248； UniProt 1–248 作者链 L； PDB构建体 1–248； UniProt 1–248 作者链 N； PDB构建体 1–248； UniProt 1–248 作者链 P； PDB构建体 1–248； UniProt 1–248 作者链 R； PDB构建体 1–248； UniProt 1–248 作者链 T； PDB构建体 1–248； UniProt 1–248 作者链 V； PDB构建体 1–248； UniProt 1–248 作者链 X； PDB构建体 1–248； UniProt 1–248

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id	2c39
沉积日期 deposition_date	2005-10-05
结构标题 title	RNase PH core of the archaeal exosome in complex with ADP
关键词 keywords	EXOSOME, RNASE PH, RRP41, RRP42, PHOSPHOROLYTIC, EXORIBONUCLEASE, RNA DEGRADATION, ARCHAEAL, HYDROLASE, EXONUCLEASE, NUCLEASE; HYDROLASE
实验方法 method	X-RAY DIFFRACTION

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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2c39__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2c39__assembly_1__model_1 | I(q)

100 个绘图点；横轴和纵轴均采用对数尺度。

2c39__assembly_1__model_1 | P(r) · Pending

P(r) 将按相同 assembly/model 分别计算和展示。

Rg（Guinier）	35.63 Å
Rg（电子密度）	34.95 Å
总 Rg	35.60 Å
原子数	11480
残基数	1510
排除体积	206190 Å³
最大 q	0.500 Å⁻¹

Assembly	Model	结构单元	聚集说明	状态	CRYSOL	操作
1	1	`2c39__assembly_1__model_1`	hexameric （6）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
2	1	`2c39__assembly_2__model_1`	hexameric （6）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
3	1	`2c39__assembly_3__model_1`	hexameric （6）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
4	1	`2c39__assembly_4__model_1`	hexameric （6）	成功	4.1.3-1-20251215 (887e7ef)	查看下载

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (3)

实体 1 Entity 1 polymer

描述 description	PROBABLE EXOSOME COMPLEX EXONUCLEASE 2
分子量 formula_weight	30227.6 kDa
EC 编号 ec_number	3.1.13.-
来源方法 src_method	man
拷贝数 entity_count	12

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	A,C,E,G,I,K,M,O,Q,S,U,W
原子数 atom_count	45814

MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI

来源 Source

来源生物 organism	SULFOLOBUS SOLFATARICUS
NCBI 分类编号 ncbi_taxonomy_id	2287
宿主生物 host_organism	ESCHERICHIA COLI

实体 2 Entity 2 polymer

描述 description	PROBABLE EXOSOME COMPLEX EXONUCLEASE 1
分子量 formula_weight	27612.9 kDa
EC 编号 ec_number	3.1.13.-
来源方法 src_method	man
拷贝数 entity_count	12

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	B,D,F,H,J,L,N,P,R,T,V,X

MREMLQVERPKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEFKEEGV

来源 Source

来源生物 organism	SULFOLOBUS SOLFATARICUS
NCBI 分类编号 ncbi_taxonomy_id	2287
宿主生物 host_organism	ESCHERICHIA COLI

实体 3 Entity 3 non-polymer

描述 description	ADENOSINE-5'-DIPHOSPHATE
分子量 formula_weight	427.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	12

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6. 折叠分类 (SCOP + CATH) 70 domains

SCOP 2.08 (46 domains)

结构域编号 domain_id	d2c39a1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39a2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39b1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39b2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39c1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39c2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39d1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39d2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39e1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39e2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39f1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39f2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39g1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39g2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39i1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39i2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39j1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39j2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39k1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39k2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39l1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39l2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39m1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39m2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39n1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39n2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39o1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39o2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39p1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39p2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39q1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39q2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39r1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39r2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39s1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39s2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39t1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39t2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39u1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39u2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39v1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39v2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39w1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39w2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

结构域编号 domain_id	d2c39x1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.14 — Ribosomal protein S5 domain 2-like
超家族 Superfamily superfamily	d.14.1 — Ribosomal protein S5 domain 2-like
家族 Family family	d.14.1.4 — Ribonuclease PH domain 1-like

结构域编号 domain_id	d2c39x2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.101 — Ribonuclease PH domain 2-like
超家族 Superfamily superfamily	d.101.1 — Ribonuclease PH domain 2-like
家族 Family family	d.101.1.1 — Ribonuclease PH domain 2-like

CATH v4.4 (24 domains)

结构域编号 domain_id	2c39A01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39B01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39C01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39D01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39E01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39F01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39G01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39H01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39I01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39J01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39K01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39L01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39M01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39N01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39O01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39P01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39Q01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39R01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39S01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39T01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39U01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39V01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39W01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

结构域编号 domain_id	2c39X01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily	70 — GHMP Kinase, N-terminal domain

▶

晶胞边长 a length_a	206.200 Å
晶胞边长 b length_b	214.000 Å
晶胞边长 c length_c	432.500 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	96

空间群 space_group	C 2 2 21
空间群编号 int_tables_number	20
晶系 crystal_system	—

分辨率 resolution	3.300 Å
最低分辨率 resolution_low	93.250 Å
R 因子 r_factor	0.2750
R_work r_work	0.2740
R_free r_free	0.2950

RNase PH core of the archaeal exosome in complex with ADP

1. 蛋白身份与相关结构 Protein Identity & Related Structures

PROBABLE EXOSOME COMPLEX EXONUCLEASE 2

当前结构中的状态

数据库中的同蛋白其他状态

PROBABLE EXOSOME COMPLEX EXONUCLEASE 1

当前结构中的状态

数据库中的同蛋白其他状态

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

2c39__assembly_1__model_1

2c39__assembly_1__model_1 | I(q)

2c39__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (3)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

实体 2 Entity 2 polymer

聚合物 Polymer

来源 Source

实体 3 Entity 3 non-polymer

6. 折叠分类 (SCOP + CATH) 70 domains

SCOP 2.08 (46 domains)

CATH v4.4 (24 domains)

7. 引用文献 (1)

RNase PH core of the archaeal exosome in complex with ADP

1. 蛋白身份与相关结构 Protein Identity & Related Structures

PROBABLE EXOSOME COMPLEX EXONUCLEASE 2

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

PROBABLE EXOSOME COMPLEX EXONUCLEASE 1

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

2c39__assembly_1__model_1

2c39__assembly_1__model_1 | I(q)

2c39__assembly_1__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (3)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

实体 2 Entity 2 polymer

聚合物 Polymer

来源 Source

实体 3 Entity 3 non-polymer

6. 折叠分类 (SCOP + CATH) 70 domains

SCOP 2.08 (46 domains)

CATH v4.4 (24 domains)

7. 引用文献 (1)