2cfo

Non-Discriminating Glutamyl-tRNA Synthetase from Thermosynechococcus elongatus in Complex with Glu

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

GLUTAMYL-TRNA SYNTHETASE

SYNECHOCOCCUS ELONGATUS

UniProt Q8DLI5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白单体 单体 蛋白 1 GLUTAMIC ACID × 1 water × 1 与蛋白数一致
2 蛋白单体 单体 蛋白 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 SYE_THEEB
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–484; UniProt 2–485 作者链 B; PDB构建体 1–484; UniProt 2–485

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id2cfo
沉积日期 deposition_date2006-02-22
结构标题 titleNon-Discriminating Glutamyl-tRNA Synthetase from Thermosynechococcus elongatus in Complex with Glu
关键词 keywordsLIGASE, AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, NUCLEOTIDE-BINDING; LIGASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2cfo__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2cfo__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2cfo__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)32.26 Å
Rg(电子密度)32.37 Å
总 Rg32.72 Å
原子数3842
残基数484
排除体积68096 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2cfo__assembly_1__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 2cfo__assembly_2__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (3)

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6. 折叠分类 (SCOP + CATH) 15 domains

SCOP 2.08 (5 domains)

结构域编号 domain_idd2cfoa1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.26 — Adenine nucleotide alpha hydrolase-like
超家族 Superfamily superfamilyc.26.1 — Nucleotidylyl transferase
家族 Family familyc.26.1.0 — automated matches
结构域编号 domain_idd2cfoa2
类 Class classa — All alpha proteins
折叠类型 Fold folda.97 — An anticodon-binding domain of class I aminoacyl-tRNA synthetases
超家族 Superfamily superfamilya.97.1 — An anticodon-binding domain of class I aminoacyl-tRNA synthetases
家族 Family familya.97.1.0 — automated matches
结构域编号 domain_idd2cfob1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.26 — Adenine nucleotide alpha hydrolase-like
超家族 Superfamily superfamilyc.26.1 — Nucleotidylyl transferase
家族 Family familyc.26.1.0 — automated matches
结构域编号 domain_idd2cfob2
类 Class classa — All alpha proteins
折叠类型 Fold folda.97 — An anticodon-binding domain of class I aminoacyl-tRNA synthetases
超家族 Superfamily superfamilya.97.1 — An anticodon-binding domain of class I aminoacyl-tRNA synthetases
家族 Family familya.97.1.0 — automated matches
结构域编号 domain_idd2cfob3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags

CATH v4.4 (10 domains)

结构域编号 domain_id2cfoA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily620 — HUPs
结构域编号 domain_id2cfoA02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology800 — Glutamyl-tRNA Synthetase; domain 3
同源超家族 H-superfamily homologous superfamily10 — Glutamyl-tRNA Synthetase; Domain 3
结构域编号 domain_id2cfoA03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1160 — Glutamyl-tRNA Synthetase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Glutamyl-trna Synthetase; Domain 2
结构域编号 domain_id2cfoA04
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology8 — Helicase, Ruva Protein; domain 3
同源超家族 H-superfamily homologous superfamily70 — Glutamate-tRNA synthetase, class I, anticodon-binding domain 1
结构域编号 domain_id2cfoA05
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily350 —
结构域编号 domain_id2cfoB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily620 — HUPs
结构域编号 domain_id2cfoB02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology800 — Glutamyl-tRNA Synthetase; domain 3
同源超家族 H-superfamily homologous superfamily10 — Glutamyl-tRNA Synthetase; Domain 3
结构域编号 domain_id2cfoB03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1160 — Glutamyl-tRNA Synthetase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Glutamyl-trna Synthetase; Domain 2
结构域编号 domain_id2cfoB04
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology8 — Helicase, Ruva Protein; domain 3
同源超家族 H-superfamily homologous superfamily70 — Glutamate-tRNA synthetase, class I, anticodon-binding domain 1
结构域编号 domain_id2cfoB05
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily350 —
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7. 引用文献 (1)