2cht

CRYSTAL STRUCTURES OF THE MONOFUNCTIONAL CHORISMATE MUTASE FROM BACILLUS SUBTILIS AND ITS COMPLEX WITH A TRANSITION STATE ANALOG

Method: X-RAY DIFFRACTION Dmax: 146.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

CHORISMATE MUTASE

Bacillus subtilis

UniProt P19080

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain A; UniProt 1–127 Chain B; UniProt 1–127 Chain C; UniProt 1–127 Not recorded TSA 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID × 3 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.20 Å
2 Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain D; UniProt 1–127 Chain E; UniProt 1–127 Chain F; UniProt 1–127 Not recorded TSA 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID × 3 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.20 Å
3 Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain G; UniProt 1–127 Chain H; UniProt 1–127 Chain I; UniProt 1–127 Not recorded TSA 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID × 3 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.20 Å
4 Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain J; UniProt 1–127 Chain K; UniProt 1–127 Chain L; UniProt 1–127 Not recorded TSA 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID × 3 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 19 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CHMU_BACSU
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–127; UniProt 1–127 Author chain B; PDBConstruct 1–127; UniProt 1–127 Author chain C; PDBConstruct 1–127; UniProt 1–127 Author chain D; PDBConstruct 1–127; UniProt 1–127 Author chain E; PDBConstruct 1–127; UniProt 1–127 Author chain F; PDBConstruct 1–127; UniProt 1–127 Author chain G; PDBConstruct 1–127; UniProt 1–127 Author chain H; PDBConstruct 1–127; UniProt 1–127 Author chain I; PDBConstruct 1–127; UniProt 1–127 Author chain J; PDBConstruct 1–127; UniProt 1–127 Author chain K; PDBConstruct 1–127; UniProt 1–127 Author chain L; PDBConstruct 1–127; UniProt 1–127

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2cht

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2cht
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2cht
Deposition date deposition_date1994-04-08
Structure title titleCRYSTAL STRUCTURES OF THE MONOFUNCTIONAL CHORISMATE MUTASE FROM BACILLUS SUBTILIS AND ITS COMPLEX WITH A TRANSITION STATE ANALOG
Keywords keywordsISOMERASE; ISOMERASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier43.40
Radius of gyration Rg (electron density) rg_electron43.26
Forward intensity I(0) i0381121000.00
Molecular weight molecular_weight161220.0 kDa
Excluded volume excluded_volume202640 ų
Envelope volume envelope_volume270250 ų
Hydration-shell volume shell_volume52929 ų
Envelope diameter envelope_diameter151.6
Shell Rg shell_rg47.26
Envelope Rg envelope_rg42.14
Shape Rg shape_rg43.28
Total Rg total_rg43.40
Total atoms total_atoms13733
Residues n_residues1391
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax146.0
Rg (real space) rg_real43.48
Rg uncertainty (real space) rg_real_error1.48
I(0) (real space) i0_real3.8110e+08
I(0) uncertainty (real space) i0_real_error7.1170e+06
Rg (reciprocal space) rg_reciprocal43.40
I(0) (reciprocal space) i0_reciprocal381100000.0000
Solution quality estimate total_estimate0.8205
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary60.8
Skewness Skewness skewness0.318
Kurtosis Kurtosis kurtosis-0.309
Angular range angular_range— – 0.1800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha260500000.0000
Real-space data points n_real_points37
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.675; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.935; Smooth: 0.703

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 24 domains

SCOP 2.08 (12 domains)

Domain ID domain_idd2chta_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtc_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtd_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chte_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtf_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtg_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chth_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chti_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtj_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtk_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase
Domain ID domain_idd2chtl_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.79 — Bacillus chorismate mutase-like
Superfamily Superfamily superfamilyd.79.1 — YjgF-like
Family Family familyd.79.1.2 — Chorismate mutase

CATH v4.4 (12 domains)

Domain ID domain_id2chtA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtC00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtD00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtE00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtF00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtG00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtH00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtI00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtJ00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtK00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like
Domain ID domain_id2chtL00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1330 — 60s Ribosomal Protein L30; Chain: A;
Homologous superfamily homologous superfamily40 — RutC-like

8. Citations (1)

9. Files and Curves (10)