2dp5

Structure of streptococcus pyogenes bacteriophage-associated hyaluronate lyase Hylp2

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Hyaluronidase

Streptococcus pyogenes

UniProt Q9A0M7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 3 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9A0M7_STRP1
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–331; UniProt 7–337

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id2dp5
Deposition date deposition_date2006-05-06
Structure title titleStructure of streptococcus pyogenes bacteriophage-associated hyaluronate lyase Hylp2
Keywords keywordsLYASE, HYALURONAN LYASE, PHAGE TAIL FIBRE, TRIPLE-STRANDED BETA-HELIX, HYALURONIDASE; LYASE
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2dp5__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2dp5__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2dp5__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)56.92 Å
Rg (electron density)60.39 Å
Total Rg59.43 Å
Atom count7554
Residues996
Excluded volume133790 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2dp5__assembly_1__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (2)

▼

6. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2dp5a1
Class classb — All beta proteins
Fold Fold foldb.108 — Triple-stranded beta-helix
Superfamily Superfamily superfamilyb.108.1 — Phage fibre proteins
Family Family familyb.108.1.5 — HylP-like
▶

7. Citations (1)