2fk0

Crystal Structure of a H5N1 influenza virus hemagglutinin.

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

当前条目没有可用的 UniProt 蛋白身份。

七张关系表仍保留该条目的 assembly 与组成信息,但缺少统一蛋白身份时,不能可靠建立跨 PDB 的同蛋白链接。

当前条目的 assembly 组成

Assembly 物理组成 蛋白状态 蛋白 / DNA / RNA / 其他聚合物 数据核对
1 其他组合 异源复合物 6 / 0 / 0 / 6 与蛋白数一致
2 其他组合 异源复合物 6 / 0 / 0 / 6 与蛋白数一致
3 其他组合 异源复合物 6 / 0 / 0 / 6 与蛋白数一致
4 其他组合 异源复合物 6 / 0 / 0 / 6 与蛋白数一致
5 蛋白异源复合物 异源复合物 6 / 0 / 0 / 0 与蛋白数一致

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id2fk0
沉积日期 deposition_date2006-01-03
结构标题 titleCrystal Structure of a H5N1 influenza virus hemagglutinin.
关键词 keywordsGLYCOPROTEIN, MEMBRANE-FUSION PRECURSOR, VIRAL PROTEIN; VIRAL PROTEIN
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2fk0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2fk0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2fk0__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)42.52 Å
Rg(电子密度)42.13 Å
总 Rg42.18 Å
原子数12097
残基数1491
排除体积213200 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2fk0__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 2fk0__assembly_2__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
3 1 2fk0__assembly_3__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
4 1 2fk0__assembly_4__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
5 1 2fk0__assembly_5__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 63 domains

SCOP 2.08 (36 domains)

结构域编号 domain_idd2fk0a1
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0a2
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0b1
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0b2
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0c2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0c3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0d2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0d3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0e2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0e3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0f2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0f3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0g2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0g3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0h2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0h3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0i2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0i3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0j2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0j3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0k2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0k3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0l2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0l3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0m2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0m3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0n2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0n3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0o2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0o3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0p2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0p3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0q2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.2 — Influenza hemagglutinin headpiece
结构域编号 domain_idd2fk0q3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd2fk0r2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.3 — Stalk segment of viral fusion proteins
超家族 Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
家族 Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
结构域编号 domain_idd2fk0r3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags

CATH v4.4 (27 domains)

结构域编号 domain_id2fk0A01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0A02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0B00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0C01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0C02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0D00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0E01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0E02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0F00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0G01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0G02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0H00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0I01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0I02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0J00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0K01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0K02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0L00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0M01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0M02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0N00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0O01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0O02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0P00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
结构域编号 domain_id2fk0Q01
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology77 — Hemagglutinin; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Hemagglutinin Chain A, Domain 2
结构域编号 domain_id2fk0Q02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology209 — Hemagglutinin (Ha1 Chain); Chain: A; domain 1
同源超家族 H-superfamily homologous superfamily20 — Haemagglutinin, alpha/beta domain, HA1 chain
结构域编号 domain_id2fk0R00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology20 — Hemagglutinin Ectodomain; Chain B
同源超家族 H-superfamily homologous superfamily10 —
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7. 引用文献 (1)