2g40

Crystal structure of a duf162 family protein (dr_1909) from deinococcus radiodurans at 1.70 A resolution

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

conserved hypothetical protein

Deinococcus radiodurans

UniProt Q9RT57

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9RT57_DEIRA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 13–224; UniProt 1–212

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2g40
Deposition date deposition_date2006-02-21
Structure title titleCrystal structure of a duf162 family protein (dr_1909) from deinococcus radiodurans at 1.70 A resolution
Keywords keywordsStructural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function; UNKNOWN FUNCTION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2g40__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2g40__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2g40__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)20.65 Å
Rg (electron density)19.82 Å
Total Rg20.68 Å
Atom count2432
Residues328
Excluded volume43283 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2g40__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2g40a1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.124 — NagB/RpiA/CoA transferase-like
Superfamily Superfamily superfamilyc.124.1 — NagB/RpiA/CoA transferase-like
Family Family familyc.124.1.7 — YkgG-like

CATH v4.4 (1 domains)

Domain ID domain_id2g40A00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10420 — NagB/RpiA/CoA transferase-like
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7. Citations (1)