2ga6
The crystal structure of SARS nsp10 without zinc ion as additive
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2ga6 |
| 沉积日期 deposition_date | 2006-03-08 |
| 结构标题 title | The crystal structure of SARS nsp10 without zinc ion as additive |
| 关键词 keywords | sars, nsp10, VIRAL PROTEIN; VIRAL PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 52.00 Å |
| 回转半径 Rg (电子) rg_electron | 51.95 Å |
| 零角强度 I(0) i0 | 1521740000.00 |
| 分子量 molecular_weight | 305510.0 kDa |
| 排除体积 excluded_volume | 372980 ų |
| 包络体积 envelope_volume | 543550 ų |
| 水化壳体积 shell_volume | 87240 ų |
| 包络直径 envelope_diameter | 172.1 Å |
| 壳层 Rg shell_rg | 55.24 Å |
| 包络 Rg envelope_rg | 50.57 Å |
| 形状 Rg shape_rg | 51.94 Å |
| 总 Rg total_rg | 52.07 Å |
| 总原子数 total_atoms | 21014 |
| 残基数 n_residues | 2835 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 170.2 Å |
| Rg (实空间) rg_real | 52.14 Å |
| Rg 误差 (实空间) rg_real_error | 1.35 Å |
| I(0) (实空间) i0_real | 1.5220e+09 |
| I(0) 误差 (实空间) i0_real_error | 2.7540e+07 |
| Rg (倒空间) rg_reciprocal | 51.86 Å |
| I(0) (倒空间) i0_reciprocal | 1521000000.0000 |
| 解质量估计 total_estimate | 0.8106 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 51.1 Å |
| 偏度 Skewness skewness | 0.408 |
| 峰度 Kurtosis kurtosis | -0.609 |
| 角度范围 angular_range | — – 0.1500 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 6223000000.0000 |
| 实空间数据点数 n_real_points | 31 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.679; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.499 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 24 domains
SCOP 2.08 (24 domains)
| 结构域编号 domain_id | d2ga6a_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6b_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6c_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6d_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6e_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6f_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6g_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6h_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6i_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6j_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6k_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6l_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6m_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6n_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6o_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6p_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6q_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6r_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6s_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6t_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6u_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6v_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6w_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2ga6x_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |