2gre

Crystal structure of Deblocking aminopeptidase from Bacillus cereus

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

当前条目没有可用的 UniProt 蛋白身份。

七张关系表仍保留该条目的 assembly 与组成信息,但缺少统一蛋白身份时,不能可靠建立跨 PDB 的同蛋白链接。

当前条目的 assembly 组成

Assembly 物理组成 蛋白状态 蛋白 / DNA / RNA / 其他聚合物 数据核对
1 蛋白同源多聚体 同源多聚体 12 / 0 / 0 / 0 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 12 / 0 / 0 / 0 与蛋白数一致

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id2gre
沉积日期 deposition_date2006-04-24
结构标题 titleCrystal structure of Deblocking aminopeptidase from Bacillus cereus
关键词 keywords;Bacillus cereus Deblocking aminopeptidase, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, HYDROLASE ;; HYDROLASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2gre__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2gre__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2gre__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)50.08 Å
Rg(电子密度)49.52 Å
总 Rg49.71 Å
原子数28942
残基数3617
排除体积515440 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2gre__assembly_1__model_1 dodecameric (12) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 2gre__assembly_2__model_1 dodecameric (12) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (3)

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6. 折叠分类 (SCOP + CATH) 64 domains

SCOP 2.08 (32 domains)

结构域编号 domain_idd2grea1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grea2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2greb1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2greb2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2grec1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grec2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2gred1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2gred2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2gree1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2gree2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2gref1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2gref2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2greg1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2greg2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2greh1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2greh2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2grei1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grei2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2grej1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grej2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2grek1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grek2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2grel1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grel2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2grem1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grem2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2gren1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2gren2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2greo1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2greo2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases
结构域编号 domain_idd2grep1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.3 — Aminopeptidase/glucanase lid domain
家族 Family familyb.49.3.1 — Aminopeptidase/glucanase lid domain
结构域编号 domain_idd2grep2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.56 — Phosphorylase/hydrolase-like
超家族 Superfamily superfamilyc.56.5 — Zn-dependent exopeptidases
家族 Family familyc.56.5.4 — Bacterial dinuclear zinc exopeptidases

CATH v4.4 (32 domains)

结构域编号 domain_id2greA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greA02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greB02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greC01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greC02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greD01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greD02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greE01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greE02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greF01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greF02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greG01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greG02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greH01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greH02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greI01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greI02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greJ01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greJ02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greK01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greK02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greL01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greL02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greM01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greM02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greN01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greN02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greO01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greO02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
结构域编号 domain_id2greP01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology630 — Aminopeptidase
同源超家族 H-superfamily homologous superfamily10 — Zn peptidases
结构域编号 domain_id2greP02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily40 — Peptidase M42, domain 2
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7. 引用文献 (1)