2gyv

Crystal structure of Mus musculus Acetylcholinesterase in complex with Ortho-7

Method: X-RAY DIFFRACTION Dmax: 129.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Acetylcholinesterase

Mus musculus

UniProt P21836

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 32–574 Chain B; UniProt 32–574 Not recorded NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 CO3 CARBONATE ION × 2 HBP 1,7-HEPTYLENE-BIS-N,N'-SYN-2-PYRIDINIUMALDOXIME × 2 P3G 3,6,9,12,15-PENTAOXAHEPTADECANE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;278 K;26-30 % PEG750MME, 0.1 M HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 278K Resolution 2.50 Å R-free 0.241

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

97 other PDB entries and 115 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACES_MOUSE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–543; UniProt 32–574 Author chain B; PDBConstruct 1–543; UniProt 32–574

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2gyv

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2gyv
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id2gyv
Deposition date deposition_date2006-05-10
Structure title titleCrystal structure of Mus musculus Acetylcholinesterase in complex with Ortho-7
Keywords keywordsAcetylcholinesterase, AChE, oxime, reactivator, Ortho-7, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier36.96
Radius of gyration Rg (electron density) rg_electron36.78
Forward intensity I(0) i0207558000.00
Molecular weight molecular_weight119110.0 kDa
Excluded volume excluded_volume149630 ų
Envelope volume envelope_volume171080 ų
Hydration-shell volume shell_volume40340 ų
Envelope diameter envelope_diameter138.1
Shell Rg shell_rg41.21
Envelope Rg envelope_rg36.88
Shape Rg shape_rg36.74
Total Rg total_rg37.18
Total atoms total_atoms8428
Residues n_residues1068
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax129.7
Rg (real space) rg_real37.32
Rg uncertainty (real space) rg_real_error1.54
I(0) (real space) i0_real2.0760e+08
I(0) uncertainty (real space) i0_real_error3.6010e+06
Rg (reciprocal space) rg_reciprocal37.10
I(0) (reciprocal space) i0_reciprocal207500000.0000
Solution quality estimate total_estimate0.7801
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary33.2
Skewness Skewness skewness0.505
Kurtosis Kurtosis kurtosis-0.511
Angular range angular_range— – 0.2150 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha52420000.0000
Real-space data points n_real_points44
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.548; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.559; Smooth: 0.940

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2gyva_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.1 — Acetylcholinesterase-like
Domain ID domain_idd2gyvb_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.1 — Acetylcholinesterase-like

CATH v4.4 (2 domains)

Domain ID domain_id2gyvA00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain
Domain ID domain_id2gyvB00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain

8. Citations (1)

9. Files and Curves (10)