Vibrio harveyi
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白异源复合物 | 异源复合物 | 蛋白 4 | Autoinducer 2 sensor kinase/phosphatase luxQ × 2 （P54302） 3A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE-2,2,6,6A-TETRAOL × 2 water × 4 | 与蛋白数一致 |
| UniProt名称 | LUXP_VIBHA |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 A； PDB构建体 1–339； UniProt 27–365 作者链 B； PDB构建体 1–339； UniProt 27–365 |
Vibrio harveyi
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白异源复合物 | 异源复合物 | 蛋白 4 | Autoinducer 2-binding periplasmic protein luxP × 2 （P54300） 3A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE-2,2,6,6A-TETRAOL × 2 water × 4 | 与蛋白数一致 |
| UniProt名称 | LUXQ_VIBHA |
| Isoform | — |
| PDB实体 | 2 |
| 链与序列区间 | 作者链 C； PDB构建体 3–221； UniProt 53–271 作者链 D； PDB构建体 3–221； UniProt 53–271 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 2hj9 |
| 沉积日期 deposition_date | 2006-06-30 |
| 结构标题 title | Crystal structure of the Autoinducer-2-bound form of Vibrio harveyi LuxP complexed with the periplasmic domain of LuxQ |
| 关键词 keywords | ;PERIPLASMIC BINDING PROTEIN, PER/ARNT/SIMPLE-MINDED (PAS) FOLD, AUTOINDUCER-2 (AI-2), QUORUM SENSING, HISTIDINE SENSOR KINASE, SIGNALING PROTEIN ;; SIGNALING PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 34.02 Å |
| Rg（电子密度） | 33.51 Å |
| 总 Rg | 34.13 Å |
| 原子数 | 8698 |
| 残基数 | 1081 |
| 排除体积 | 154060 ų |
| 最大 q | 0.500 Å⁻¹ |
| 结构域编号 domain_id | d2hj9a_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.93 — Periplasmic binding protein-like I |
| 超家族 Superfamily superfamily | c.93.1 — Periplasmic binding protein-like I |
| 家族 Family family | c.93.1.1 — L-arabinose binding protein-like |
| 结构域编号 domain_id | d2hj9b_ |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.93 — Periplasmic binding protein-like I |
| 超家族 Superfamily superfamily | c.93.1 — Periplasmic binding protein-like I |
| 家族 Family family | c.93.1.1 — L-arabinose binding protein-like |
| 结构域编号 domain_id | d2hj9c1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.110 — Profilin-like |
| 超家族 Superfamily superfamily | d.110.6 — Sensory domain-like |
| 家族 Family family | d.110.6.3 — LuxQ-periplasmic domain-like |
| 结构域编号 domain_id | d2hj9d_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.110 — Profilin-like |
| 超家族 Superfamily superfamily | d.110.6 — Sensory domain-like |
| 家族 Family family | d.110.6.3 — LuxQ-periplasmic domain-like |
| 结构域编号 domain_id | 2hj9A01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 2300 — Response regulator |
| 结构域编号 domain_id | 2hj9A02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 2300 — Response regulator |
| 结构域编号 domain_id | 2hj9B01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 2300 — Response regulator |
| 结构域编号 domain_id | 2hj9B02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 2300 — Response regulator |
| 结构域编号 domain_id | 2hj9C01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 220 — LuxQ periplasmic domain, N-terminal subdomain |
| 结构域编号 domain_id | 2hj9C02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 20 — Anthopleurin-A |
| 同源超家族 H-superfamily homologous superfamily | 100 — LuxQ periplasmic domain, C-terminal subdomain |
| 结构域编号 domain_id | 2hj9D01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 220 — LuxQ periplasmic domain, N-terminal subdomain |
| 结构域编号 domain_id | 2hj9D02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 20 — Single Sheet |
| 拓扑 Topology topology | 20 — Anthopleurin-A |
| 同源超家族 H-superfamily homologous superfamily | 100 — LuxQ periplasmic domain, C-terminal subdomain |