← Back to search
2jmd

Solution Structure of the Ring Domain of Human TRAF6

Method: SOLUTION NMR
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

TNF receptor-associated factor 6

Homo sapiens

UniProt Q9Y4K3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 ZINC ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1lb4 2eci 2jmd

3 assemblies

Homodimer
3hcs 8hz2

2 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1lb5 1lb6 3hct 3hcu 3hcu 4z8m 4z8m 5zuj 6a33 7l3l 7l3l

11 assemblies

View Construct and Data Evidence
UniProt name TRAF6_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 6–63； UniProt 67–124

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id2jmd
Deposition date deposition_date2006-11-02
Structure title titleSolution Structure of the Ring Domain of Human TRAF6
Keywords keywordsProtein, Zinc-binding, human TNF receptor-associated factor 6, Zn2+ coordination, LIGASE; LIGASE
Experimental Method methodSOLUTION NMR
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2jmd__assembly_1__model_34

Assembly 1 · Model 34 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2jmd__assembly_1__model_34 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2jmd__assembly_1__model_34 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）12.60 Å
Rg (electron density)11.42 Å
Total Rg12.70 Å
Atom count976
Residues63
Excluded volume8803 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2jmd__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 2jmd__assembly_1__model_2 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 2jmd__assembly_1__model_3 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 2jmd__assembly_1__model_4 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 5 2jmd__assembly_1__model_5 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 6 2jmd__assembly_1__model_6 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 7 2jmd__assembly_1__model_7 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 8 2jmd__assembly_1__model_8 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 9 2jmd__assembly_1__model_9 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 10 2jmd__assembly_1__model_10 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 11 2jmd__assembly_1__model_11 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 12 2jmd__assembly_1__model_12 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 13 2jmd__assembly_1__model_13 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 14 2jmd__assembly_1__model_14 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 15 2jmd__assembly_1__model_15 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 16 2jmd__assembly_1__model_16 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 17 2jmd__assembly_1__model_17 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 18 2jmd__assembly_1__model_18 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 19 2jmd__assembly_1__model_19 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 20 2jmd__assembly_1__model_20 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 21 2jmd__assembly_1__model_21 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 22 2jmd__assembly_1__model_22 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 23 2jmd__assembly_1__model_23 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 24 2jmd__assembly_1__model_24 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 25 2jmd__assembly_1__model_25 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 26 2jmd__assembly_1__model_26 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 27 2jmd__assembly_1__model_27 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 28 2jmd__assembly_1__model_28 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 29 2jmd__assembly_1__model_29 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 30 2jmd__assembly_1__model_30 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 31 2jmd__assembly_1__model_31 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 32 2jmd__assembly_1__model_32 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 33 2jmd__assembly_1__model_33 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 34 2jmd__assembly_1__model_34 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 35 2jmd__assembly_1__model_35 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 36 2jmd__assembly_1__model_36 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 37 2jmd__assembly_1__model_37 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 38 2jmd__assembly_1__model_38 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 39 2jmd__assembly_1__model_39 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 40 2jmd__assembly_1__model_40 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 41 2jmd__assembly_1__model_41 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 42 2jmd__assembly_1__model_42 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 43 2jmd__assembly_1__model_43 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 44 2jmd__assembly_1__model_44 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 45 2jmd__assembly_1__model_45 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 46 2jmd__assembly_1__model_46 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 47 2jmd__assembly_1__model_47 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 48 2jmd__assembly_1__model_48 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 49 2jmd__assembly_1__model_49 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 50 2jmd__assembly_1__model_50 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (2)

▼

6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id2jmdA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology40 — Herpes Virus-1
Homologous superfamily homologous superfamily10 — Zinc/RING finger domain, C3HC4 (zinc finger)
▶

7. Citations (1)