2jri

Solution structure of the Josephin domain of Ataxin-3 in complex with ubiquitin molecule.

Method: SOLUTION NMR
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Ataxin-3

Homo sapiens

UniProt P54252

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 UBC protein × 2 (Q96H31) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATX3_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–182; UniProt 1–182

UBC protein

Homo sapiens

UniProt Q96H31

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Ataxin-3 × 1 (P54252) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q96H31_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–76; UniProt 318–393 Author chain C; PDBConstruct 1–76; UniProt 318–393

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2jri
Deposition date deposition_date2007-06-27
Structure title titleSolution structure of the Josephin domain of Ataxin-3 in complex with ubiquitin molecule.
Keywords keywords;di-ubiquitin, Lys48-linked, Josephin domain of ataxin-3, spinocerebellar ataxia type 3 protein, Alternative splicing, Hydrolase, Neurodegeneration, Nucleus, Phosphorylation, Polymorphism, Transcription, Transcription regulation, Triplet repeat expansion, HYDROLASE-SIGNALING PROTEIN COMPLEX ;; HYDROLASE/SIGNALING PROTEIN
Experimental Method methodSOLUTION NMR
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2jri__assembly_1__model_6

Assembly 1 · Model 6 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2jri__assembly_1__model_6 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2jri__assembly_1__model_6 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)23.40 Å
Rg (electron density)22.32 Å
Total Rg23.25 Å
Atom count5377
Residues334
Excluded volume47868 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2jri__assembly_1__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 2jri__assembly_1__model_2 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 2jri__assembly_1__model_3 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 2jri__assembly_1__model_4 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 5 2jri__assembly_1__model_5 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 6 2jri__assembly_1__model_6 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 7 2jri__assembly_1__model_7 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 8 2jri__assembly_1__model_8 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 9 2jri__assembly_1__model_9 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 10 2jri__assembly_1__model_10 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 11 2jri__assembly_1__model_11 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 12 2jri__assembly_1__model_12 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 13 2jri__assembly_1__model_13 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 14 2jri__assembly_1__model_14 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 15 2jri__assembly_1__model_15 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 16 2jri__assembly_1__model_16 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 17 2jri__assembly_1__model_17 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 18 2jri__assembly_1__model_18 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 19 2jri__assembly_1__model_19 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
1 20 2jri__assembly_1__model_20 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2jrib_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.1 — Ubiquitin-like
Family Family familyd.15.1.1 — Ubiquitin-related
Domain ID domain_idd2jric_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.1 — Ubiquitin-like
Family Family familyd.15.1.1 — Ubiquitin-related

CATH v4.4 (4 domains)

Domain ID domain_id2jriA01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology70 — Cathepsin B; Chain A
Homologous superfamily homologous superfamily40 —
Domain ID domain_id2jriA02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily10 — S15/NS1, RNA-binding
Domain ID domain_id2jriB00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Domain ID domain_id2jriC00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
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7. Citations (2)