Yersinia pestis
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | No other associated polymer | Consistent with protein count |
| UniProt name | YMOA_YERPE |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 2–67； UniProt 2–67 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 2k5s |
| Deposition date deposition_date | 2008-06-30 |
| Structure title title | YmoA |
| Keywords keywords | PROTEIN, DNA-binding, TRANSCRIPTION REGULATOR; TRANSCRIPTION REGULATOR |
| Experimental Method method | SOLUTION NMR |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 9 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 14.72 Å |
| Rg (electron density) | 13.38 Å |
| Total Rg | 14.51 Å |
| Atom count | 1238 |
| Residues | 73 |
| Excluded volume | 10967 ų |
| Maximum q | 0.500 Å⁻¹ |
| Assembly | Model | Structure unit | Oligomeric description | Status | CRYSOL | Actions |
|---|---|---|---|---|---|---|
| 1 | 1 | 2k5s__assembly_1__model_1 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 2 | 2k5s__assembly_1__model_2 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 3 | 2k5s__assembly_1__model_3 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 4 | 2k5s__assembly_1__model_4 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 5 | 2k5s__assembly_1__model_5 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 6 | 2k5s__assembly_1__model_6 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 7 | 2k5s__assembly_1__model_7 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 8 | 2k5s__assembly_1__model_8 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 9 | 2k5s__assembly_1__model_9 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 10 | 2k5s__assembly_1__model_10 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| Domain ID domain_id | d2k5sa1 |
| Class class | a — All alpha proteins |
| Fold Fold fold | a.23 — Open three-helical up-and-down bundle |
| Superfamily Superfamily superfamily | a.23.5 — Hemolysin expression modulating protein HHA |
| Family Family family | a.23.5.1 — Hemolysin expression modulating protein HHA |
| Domain ID domain_id | d2k5sa2 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | d2k5sa3 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | 2k5sA00 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 20 — Up-down Bundle |
| Topology topology | 1280 — Monooxygenase |
| Homologous superfamily homologous superfamily | 40 — HHA |