Desulfovibrio vulgaris str. Hildenborough
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | NICKEL (II) ION × 1 | Consistent with protein count |
| UniProt name | RUBR_DESVH |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–52； UniProt 1–52 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 2kkd |
| Deposition date deposition_date | 2009-06-18 |
| Structure title title | NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin |
| Keywords keywords | electron transport, [Fe-4S], iron, metal-binding, Cytoplasm, Transport; ELECTRON TRANSPORT |
| Experimental Method method | SOLUTION NMR |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 8 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 11.06 Å |
| Rg (electron density) | 9.62 Å |
| Total Rg | 11.23 Å |
| Atom count | 743 |
| Residues | 52 |
| Excluded volume | 6855 ų |
| Maximum q | 0.500 Å⁻¹ |
| Assembly | Model | Structure unit | Oligomeric description | Status | CRYSOL | Actions |
|---|---|---|---|---|---|---|
| 1 | 1 | 2kkd__assembly_1__model_1 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 2 | 2kkd__assembly_1__model_2 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 3 | 2kkd__assembly_1__model_3 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 4 | 2kkd__assembly_1__model_4 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 5 | 2kkd__assembly_1__model_5 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 6 | 2kkd__assembly_1__model_6 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 7 | 2kkd__assembly_1__model_7 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 8 | 2kkd__assembly_1__model_8 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 9 | 2kkd__assembly_1__model_9 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 10 | 2kkd__assembly_1__model_10 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 11 | 2kkd__assembly_1__model_11 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 12 | 2kkd__assembly_1__model_12 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 13 | 2kkd__assembly_1__model_13 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 14 | 2kkd__assembly_1__model_14 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 15 | 2kkd__assembly_1__model_15 |
monomeric （1） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| Domain ID domain_id | d2kkda_ |
| Class class | g — Small proteins |
| Fold Fold fold | g.41 — Rubredoxin-like |
| Superfamily Superfamily superfamily | g.41.5 — Rubredoxin-like |
| Family Family family | g.41.5.1 — Rubredoxin |
| Domain ID domain_id | 2kkdA00 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 20 — Single Sheet |
| Topology topology | 28 — Rubrerythrin, domain 2 |
| Homologous superfamily homologous superfamily | 10 — |