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2lbu

HADDOCK calculated model of Congo red bound to the HET-s amyloid

Method: SOLID-STATE NMR
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Small s protein

Podospora anserina

UniProt Q03689

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 5 ;sodium 3,3'-(1E,1'E)-biphenyl-4,4'-diylbis(diazene-2,1-diyl)bis(4-aminonaphthalene-1-sulfonate) ; × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer
2wvn 2wvq

2 assemblies

Homotetramer

None

Other homooligomers
2kj3 2lbu 2mus 2rnm

4 assemblies

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name Q03689_PODAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–73； UniProt 218–289 Author chain B； PDBConstruct 2–73； UniProt 218–289 Author chain C； PDBConstruct 2–73； UniProt 218–289 Author chain D； PDBConstruct 2–73； UniProt 218–289 Author chain E； PDBConstruct 2–73； UniProt 218–289

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2lbu
Deposition date deposition_date2011-04-07
Structure title titleHADDOCK calculated model of Congo red bound to the HET-s amyloid
Keywords keywordsamyloid, ligand, amyloid dye, Congo red, prion protein, PROTEIN FIBRIL; PROTEIN FIBRIL
Experimental Method methodSOLID-STATE NMR
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2lbu__assembly_1__model_4

Assembly 1 · Model 4 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2lbu__assembly_1__model_4 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2lbu__assembly_1__model_4 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）21.68 Å
Rg (electron density)20.57 Å
Total Rg21.44 Å
Atom count3558
Residues355
Excluded volume48020 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2lbu__assembly_1__model_1 pentameric （5） Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 2lbu__assembly_1__model_2 pentameric （5） Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 2lbu__assembly_1__model_3 pentameric （5） Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 2lbu__assembly_1__model_4 pentameric （5） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)