2mpf

Solution structure human HCN2 CNBD in the cAMP-unbound state

Method: SOLUTION NMR Dmax: 63.3 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2

Homo sapiens

UniProt Q9UL51

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 521–672 Fragment:cyclic nucleotide binding domain (UNP residues 521-672) No other associated polymer SOLUTION NMR NMR measurement conditions:pH 7;298 K;Pressure ambient NMR sample composition:1 mM [U-15N] HCN2 CNBD, 20 mM potassium phosphate, 150 mM potassium chloride, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1 mM [U-13C; U-15N] HCN2 CNBD, 20 mM potassium phosphate, 150 mM potassium chloride, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1 mM HCN2 CNBD, 20 mM potassium phosphate, 150 mM potassium chloride, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HCN2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 7–158; UniProt 521–672

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2mpf

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2mpf
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2mpf
Deposition date deposition_date2014-05-16
Structure title titleSolution structure human HCN2 CNBD in the cAMP-unbound state
Keywords keywordsHCN channels, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier17.00
Radius of gyration Rg (electron density) rg_electron16.56
Forward intensity I(0) i01354920000.00
Molecular weight molecular_weight317690.0 kDa
Excluded volume excluded_volume400590 ų
Envelope volume envelope_volume62858 ų
Hydration-shell volume shell_volume24270 ų
Envelope diameter envelope_diameter70.3
Shell Rg shell_rg29.04
Envelope Rg envelope_rg22.25
Shape Rg shape_rg16.56
Total Rg total_rg16.84
Total atoms total_atoms45040
Residues n_residues2780
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax63.3
Rg (real space) rg_real16.97
Rg uncertainty (real space) rg_real_error0.45
I(0) (real space) i0_real1.3550e+09
I(0) uncertainty (real space) i0_real_error1.8620e+07
Rg (reciprocal space) rg_reciprocal16.97
I(0) (reciprocal space) i0_reciprocal1355000000.0000
Solution quality estimate total_estimate0.7550
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary20.0
Skewness Skewness skewness0.313
Kurtosis Kurtosis kurtosis-0.103
Angular range angular_range— – 0.4700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha654800.0000
Real-space data points n_real_points77
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.638; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.897; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2mpfa_
Class classb — All beta proteins
Fold Fold foldb.82 — Double-stranded beta-helix
Superfamily Superfamily superfamilyb.82.3 — cAMP-binding domain-like
Family Family familyb.82.3.2 — cAMP-binding domain

CATH v4.4 (1 domains)

Domain ID domain_id2mpfA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily10 — Jelly Rolls

8. Citations (1)

9. Files and Curves (10)