Homo sapiens
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein heterocomplex | Heteromer | Protein 2 | DNA damage-inducible protein 1 × 1 （P40087） | Consistent with protein count |
| UniProt name | UBB_HUMAN |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–76； UniProt 1–76 |
Saccharomyces cerevisiae
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein heterocomplex | Heteromer | Protein 2 | Polyubiquitin-B × 1 （P0CG47） | Consistent with protein count |
| UniProt name | DDI1_YEAST |
| Isoform | — |
| PDB entities | 2 |
| Chains and sequence ranges | Author chain B； PDBConstruct 4–43； UniProt 389–428 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 2mro |
| Deposition date deposition_date | 2014-07-14 |
| Structure title title | Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1) |
| Keywords keywords | ;DNA-damage-inducible 1 protein, Ubiquitin associated domain, Ddi1, UBA, HYDROLASE-SIGNALING PROTEIN complex, TRANSPORT PROTEIN-SIGNALING PROTEIN complex ;; TRANSPORT PROTEIN/SIGNALING PROTEIN |
| Experimental Method method | SOLUTION NMR |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 5 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 15.96 Å |
| Rg (electron density) | 14.58 Å |
| Total Rg | 15.80 Å |
| Atom count | 1156 |
| Residues | 120 |
| Excluded volume | 16790 ų |
| Maximum q | 0.500 Å⁻¹ |
| Assembly | Model | Structure unit | Oligomeric description | Status | CRYSOL | Actions |
|---|---|---|---|---|---|---|
| 1 | 1 | 2mro__assembly_1__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 2 | 2mro__assembly_1__model_2 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 3 | 2mro__assembly_1__model_3 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 4 | 2mro__assembly_1__model_4 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 5 | 2mro__assembly_1__model_5 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 6 | 2mro__assembly_1__model_6 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 7 | 2mro__assembly_1__model_7 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 8 | 2mro__assembly_1__model_8 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 9 | 2mro__assembly_1__model_9 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 1 | 10 | 2mro__assembly_1__model_10 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| Domain ID domain_id | d2mroa_ |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.15 — beta-Grasp (ubiquitin-like) |
| Superfamily Superfamily superfamily | d.15.1 — Ubiquitin-like |
| Family Family family | d.15.1.1 — Ubiquitin-related |
| Domain ID domain_id | 2mroB00 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 8 — Helicase, Ruva Protein; domain 3 |
| Homologous superfamily homologous superfamily | 10 — Ubiquitin-associated (UBA) domain |