2n03

Solution NMR Structure plectin repeat domain 6 (4403-4606) of Plectin from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR6354E

Method: SOLUTION NMR Dmax: 65.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Plectin

Homo sapiens

UniProt Q15149

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 4403–4606 Fragment:residues 4403-4606 No other associated polymer SOLUTION NMR NMR measurement conditions:pH 6.5;298 K;Ionic strength (raw mmCIF value) 100;Pressure ambient NMR sample composition:1 mM [U-100% 13C; U-100% 15N; U-2H; ILV-1H] protein, 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02 mM NaN3, 50 uM DSS, 1 ratio protease inhibitor, 90/10 % H2O/D2O, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02 mM NaN3, 50 uM DSS, 1 ratio protease inhibitor, 90/10 % H2O/D2O, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1 mM [U-5% 13C; U-100% 15N] protein, 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 10 mM DTT, 0.02 mM NaN3, 50 uM DSS, 1 ratio protease inhibitor, 90/10 % H2O/D2O, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 23 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PLEC_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 12–215; UniProt 4403–4606

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2n03

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2n03
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2n03
Deposition date deposition_date2015-03-04
Structure title titleSolution NMR Structure plectin repeat domain 6 (4403-4606) of Plectin from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR6354E
Keywords keywordscytoskeletal-linker protein, PSI-BIOLOGY, NESG, STRUCTURAL PROTEIN, Structural Genomics, Northeast Structural Genomics Consortium; STRUCTURAL PROTEIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.17
Radius of gyration Rg (electron density) rg_electron17.72
Forward intensity I(0) i03280760000.00
Molecular weight molecular_weight474540.0 kDa
Excluded volume excluded_volume589830 ų
Envelope volume envelope_volume86568 ų
Hydration-shell volume shell_volume30630 ų
Envelope diameter envelope_diameter77.3
Shell Rg shell_rg31.04
Envelope Rg envelope_rg22.98
Shape Rg shape_rg17.71
Total Rg total_rg17.98
Total atoms total_atoms66540
Residues n_residues4300
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax65.7
Rg (real space) rg_real18.11
Rg uncertainty (real space) rg_real_error0.51
I(0) (real space) i0_real3.2810e+09
I(0) uncertainty (real space) i0_real_error4.5970e+07
Rg (reciprocal space) rg_reciprocal18.12
I(0) (reciprocal space) i0_reciprocal3281000000.0000
Solution quality estimate total_estimate0.7562
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary22.2
Skewness Skewness skewness0.316
Kurtosis Kurtosis kurtosis-0.175
Angular range angular_range— – 0.4400 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha4129000.0000
Real-space data points n_real_points75
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.617; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.977; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id2n03A00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1290 — beta-hairpin-alpha-hairpin repeat
Homologous superfamily homologous superfamily10 — Plakin repeat

8. Citations (1)

9. Files and Curves (10)