2nap
DISSIMILATORY NITRATE REDUCTASE (NAP) FROM DESULFOVIBRIO DESULFURICANS
1. Protein Identity and Related Structures Protein Identity & Related Structures
No usable UniProt protein identity is available for this entry.
The relationship tables retain this entry's assembly and composition data, but cross-PDB links for the same protein cannot be established reliably without a unified protein identity.
Assembly Composition of the Current Entry
| Assembly | Physical composition | Protein state | 蛋白 / DNA / RNA / 其他Polymer | Data consistency |
|---|---|---|---|---|
| 1 | Protein monomer | Monomer | 1 / 0 / 0 / 0 | Consistent with protein count |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
2. Structure Basics 2. Structure Basics
| Entry ID entry_id | 2nap |
| Deposition date deposition_date | 1998-09-18 |
| Structure title title | DISSIMILATORY NITRATE REDUCTASE (NAP) FROM DESULFOVIBRIO DESULFURICANS |
| Keywords keywords | ;NITROGENOUS ACCEPTOR, DISSIMILATORY NITRATE REDUCTASE, MULTIWAVELENGTH ANOMALOUS DIFFRACTION, MOLYBDOPTERIN COFACTOR, [4FE-4S] CLUSTER, OXIDOREDUCTASE ;; OXIDOREDUCTASE |
| Experimental Method method | X-RAY DIFFRACTION |
3. Official assembly/model SAXS Official SAXS Profiles
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
2nap__assembly_1__model_1
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
2nap__assembly_1__model_1 | I(q)
2nap__assembly_1__model_1 | P(r) · Pending
| Rg（Guinier） | 25.32 Å |
| Rg (electron density) | 24.52 Å |
| Total Rg | 25.20 Å |
| Atom count | 5706 |
| Residues | 720 |
| Excluded volume | 100800 ų |
| Maximum q | 0.500 Å⁻¹ |
4. Crystallography and Experiment 4. Crystallography & Experiment
5. Entities and Polymers Entities & Polymers (6)
6. Fold Classification (SCOP + CATH) 6 domains
SCOP 2.08 (2 domains)
| Domain ID domain_id | d2napa1 |
| Class class | b — All beta proteins |
| Fold Fold fold | b.52 — Double psi beta-barrel |
| Superfamily Superfamily superfamily | b.52.2 — ADC-like |
| Family Family family | b.52.2.2 — Formate dehydrogenase/DMSO reductase, C-terminal domain |
| Domain ID domain_id | d2napa2 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.81 — Formate dehydrogenase/DMSO reductase, domains 1-3 |
| Superfamily Superfamily superfamily | c.81.1 — Formate dehydrogenase/DMSO reductase, domains 1-3 |
| Family Family family | c.81.1.1 — Formate dehydrogenase/DMSO reductase, domains 1-3 |
CATH v4.4 (4 domains)
| Domain ID domain_id | 2napA01 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 20 — Single Sheet |
| Topology topology | 25 — N-terminal domain of TfIIb |
| Homologous superfamily homologous superfamily | 90 — ADC-like domains |
| Domain ID domain_id | 2napA02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| Topology topology | 50 — Rossmann fold |
| Homologous superfamily homologous superfamily | 740 — |
| Domain ID domain_id | 2napA03 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| Topology topology | 228 — Dimethylsulfoxide Reductase; domain 2 |
| Homologous superfamily homologous superfamily | 10 — Dimethylsulfoxide Reductase, domain 2 |
| Domain ID domain_id | 2napA04 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 40 — Beta Barrel |
| Topology topology | 40 — Barwin-like endoglucanases |
| Homologous superfamily homologous superfamily | 20 — |