Thermotoga maritima
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | CHLORIDE ION × 3 GLYCEROL × 1 water × 1 | Consistent with protein count |
| UniProt name | SYE1_THEMA |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 13–481； UniProt 1–469 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 2o5r |
| Deposition date deposition_date | 2006-12-06 |
| Structure title title | Crystal structure of Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate-tRNA ligase 1) (GluRS 1) (TM1351) from Thermotoga maritima at 2.5 A resolution |
| Keywords keywords | ;TM1351, Glutamyl-tRNA synthetase 1, EC 6.1.1.17, Glutamate-tRNA ligase 1, GluRS 1, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, LIGASE ;; LIGASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 31.90 Å |
| Rg (electron density) | 32.24 Å |
| Total Rg | 32.54 Å |
| Atom count | 3837 |
| Residues | 454 |
| Excluded volume | 69025 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d2o5ra1 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.26 — Adenine nucleotide alpha hydrolase-like |
| Superfamily Superfamily superfamily | c.26.1 — Nucleotidylyl transferase |
| Family Family family | c.26.1.0 — automated matches |
| Domain ID domain_id | d2o5ra2 |
| Class class | a — All alpha proteins |
| Fold Fold fold | a.97 — An anticodon-binding domain of class I aminoacyl-tRNA synthetases |
| Superfamily Superfamily superfamily | a.97.1 — An anticodon-binding domain of class I aminoacyl-tRNA synthetases |
| Family Family family | a.97.1.0 — automated matches |
| Domain ID domain_id | 2o5rA01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| Topology topology | 50 — Rossmann fold |
| Homologous superfamily homologous superfamily | 620 — HUPs |
| Domain ID domain_id | 2o5rA02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 800 — Glutamyl-tRNA Synthetase; domain 3 |
| Homologous superfamily homologous superfamily | 10 — Glutamyl-tRNA Synthetase; Domain 3 |
| Domain ID domain_id | 2o5rA03 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 1160 — Glutamyl-tRNA Synthetase; domain 2 |
| Homologous superfamily homologous superfamily | 10 — Glutamyl-trna Synthetase; Domain 2 |
| Domain ID domain_id | 2o5rA04 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 8 — Helicase, Ruva Protein; domain 3 |
| Homologous superfamily homologous superfamily | 70 — Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 |
| Domain ID domain_id | 2o5rA05 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 10 — Arc Repressor Mutant, subunit A |
| Homologous superfamily homologous superfamily | 350 — |