2p9s

Structure of bovine Arp2/3 complex co-crystallized with ATP/Mg2+

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Actin-like protein 3

Bos taurus

UniProt P61157

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 Actin-like protein 2 × 1 (A7MB62) Actin-related protein 2/3 complex subunit 1B × 1 (Q58CQ2) Actin-related protein 2/3 complex subunit 2 × 1 (Q3MHR7) Actin-related protein 2/3 complex subunit 3 × 1 (Q3T035) Actin-related protein 2/3 complex subunit 4 × 1 (Q148J6) Actin-related protein 2/3 complex subunit 5 × 1 (Q3SYX9) MAGNESIUM ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 2 water × 7 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARP3_BOVIN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–418; UniProt 1–418

Actin-like protein 2

Bos taurus

UniProt A7MB62

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 Actin-like protein 3 × 1 (P61157) Actin-related protein 2/3 complex subunit 1B × 1 (Q58CQ2) Actin-related protein 2/3 complex subunit 2 × 1 (Q3MHR7) Actin-related protein 2/3 complex subunit 3 × 1 (Q3T035) Actin-related protein 2/3 complex subunit 4 × 1 (Q148J6) Actin-related protein 2/3 complex subunit 5 × 1 (Q3SYX9) MAGNESIUM ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 2 water × 7 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARP2_BOVIN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–394; UniProt 1–394

Actin-related protein 2/3 complex subunit 1B

Bos taurus

UniProt Q58CQ2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 Actin-like protein 3 × 1 (P61157) Actin-like protein 2 × 1 (A7MB62) Actin-related protein 2/3 complex subunit 2 × 1 (Q3MHR7) Actin-related protein 2/3 complex subunit 3 × 1 (Q3T035) Actin-related protein 2/3 complex subunit 4 × 1 (Q148J6) Actin-related protein 2/3 complex subunit 5 × 1 (Q3SYX9) MAGNESIUM ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 2 water × 7 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARC1B_BOVIN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–372; UniProt 1–372

Actin-related protein 2/3 complex subunit 2

Bos taurus

UniProt Q3MHR7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 Actin-like protein 3 × 1 (P61157) Actin-like protein 2 × 1 (A7MB62) Actin-related protein 2/3 complex subunit 1B × 1 (Q58CQ2) Actin-related protein 2/3 complex subunit 3 × 1 (Q3T035) Actin-related protein 2/3 complex subunit 4 × 1 (Q148J6) Actin-related protein 2/3 complex subunit 5 × 1 (Q3SYX9) MAGNESIUM ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 2 water × 7 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC2_BOVIN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–300; UniProt 1–300

Actin-related protein 2/3 complex subunit 3

Bos taurus

UniProt Q3T035

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 Actin-like protein 3 × 1 (P61157) Actin-like protein 2 × 1 (A7MB62) Actin-related protein 2/3 complex subunit 1B × 1 (Q58CQ2) Actin-related protein 2/3 complex subunit 2 × 1 (Q3MHR7) Actin-related protein 2/3 complex subunit 4 × 1 (Q148J6) Actin-related protein 2/3 complex subunit 5 × 1 (Q3SYX9) MAGNESIUM ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 2 water × 7 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC3_BOVIN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–178; UniProt 1–178

Actin-related protein 2/3 complex subunit 4

Bos taurus

UniProt Q148J6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 Actin-like protein 3 × 1 (P61157) Actin-like protein 2 × 1 (A7MB62) Actin-related protein 2/3 complex subunit 1B × 1 (Q58CQ2) Actin-related protein 2/3 complex subunit 2 × 1 (Q3MHR7) Actin-related protein 2/3 complex subunit 3 × 1 (Q3T035) Actin-related protein 2/3 complex subunit 5 × 1 (Q3SYX9) MAGNESIUM ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 2 water × 7 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC4_BOVIN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–168; UniProt 1–168

Actin-related protein 2/3 complex subunit 5

Bos taurus

UniProt Q3SYX9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 7 Actin-like protein 3 × 1 (P61157) Actin-like protein 2 × 1 (A7MB62) Actin-related protein 2/3 complex subunit 1B × 1 (Q58CQ2) Actin-related protein 2/3 complex subunit 2 × 1 (Q3MHR7) Actin-related protein 2/3 complex subunit 3 × 1 (Q3T035) Actin-related protein 2/3 complex subunit 4 × 1 (Q148J6) MAGNESIUM ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 2 water × 7 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARPC5_BOVIN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–151; UniProt 1–151

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2p9s
Deposition date deposition_date2007-03-26
Structure title titleStructure of bovine Arp2/3 complex co-crystallized with ATP/Mg2+
Keywords keywordsactin, WD repeat, complex, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2p9s__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2p9s__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2p9s__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)43.47 Å
Rg (electron density)43.11 Å
Total Rg43.34 Å
Atom count13375
Residues1690
Excluded volume238100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2p9s__assembly_1__model_1 heptameric (7) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (10)

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6. Fold Classification (SCOP + CATH) 21 domains

SCOP 2.08 (9 domains)

Domain ID domain_idd2p9sa1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.55 — Ribonuclease H-like motif
Superfamily Superfamily superfamilyc.55.1 — Actin-like ATPase domain
Family Family familyc.55.1.1 — Actin/HSP70
Domain ID domain_idd2p9sa2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.55 — Ribonuclease H-like motif
Superfamily Superfamily superfamilyc.55.1 — Actin-like ATPase domain
Family Family familyc.55.1.1 — Actin/HSP70
Domain ID domain_idd2p9sb_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.55 — Ribonuclease H-like motif
Superfamily Superfamily superfamilyc.55.1 — Actin-like ATPase domain
Family Family familyc.55.1.1 — Actin/HSP70
Domain ID domain_idd2p9sc_
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.4 — WD40 repeat-like
Family Family familyb.69.4.1 — WD40-repeat
Domain ID domain_idd2p9sd1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.198 — Secretion chaperone-like
Superfamily Superfamily superfamilyd.198.2 — Arp2/3 complex subunits
Family Family familyd.198.2.1 — Arp2/3 complex subunits
Domain ID domain_idd2p9sd2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.198 — Secretion chaperone-like
Superfamily Superfamily superfamilyd.198.2 — Arp2/3 complex subunits
Family Family familyd.198.2.1 — Arp2/3 complex subunits
Domain ID domain_idd2p9se_
Class classa — All alpha proteins
Fold Fold folda.148 — Arp2/3 complex 21 kDa subunit ARPC3
Superfamily Superfamily superfamilya.148.1 — Arp2/3 complex 21 kDa subunit ARPC3
Family Family familya.148.1.1 — Arp2/3 complex 21 kDa subunit ARPC3
Domain ID domain_idd2p9sf_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.198 — Secretion chaperone-like
Superfamily Superfamily superfamilyd.198.2 — Arp2/3 complex subunits
Family Family familyd.198.2.1 — Arp2/3 complex subunits
Domain ID domain_idd2p9sg_
Class classa — All alpha proteins
Fold Fold folda.118 — alpha-alpha superhelix
Superfamily Superfamily superfamilya.118.13 — Arp2/3 complex 16 kDa subunit ARPC5
Family Family familya.118.13.1 — Arp2/3 complex 16 kDa subunit ARPC5

CATH v4.4 (12 domains)

Domain ID domain_id2p9sA01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id2p9sA02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology36 — Actin; Chain A, domain 2
Homologous superfamily homologous superfamily70 — Actin; Chain A, domain 2
Domain ID domain_id2p9sA03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id2p9sA04
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
Domain ID domain_id2p9sB01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id2p9sB02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
Domain ID domain_id2p9sC00
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id2p9sD01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1460 — Yope Regulator; Chain: A,
Homologous superfamily homologous superfamily20 —
Domain ID domain_id2p9sD02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1460 — Yope Regulator; Chain: A,
Homologous superfamily homologous superfamily20 —
Domain ID domain_id2p9sE00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1760 — Arp2/3 complex 21 kDa subunit ARPC3
Homologous superfamily homologous superfamily10 — Actin-related protein 2/3 complex subunit 3
Domain ID domain_id2p9sF00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1460 — Yope Regulator; Chain: A,
Homologous superfamily homologous superfamily20 —
Domain ID domain_id2p9sG00
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily190 — Actin-related protein 2/3 complex subunit 5
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7. Citations (1)