Saccharomyces cerevisiae
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白单体 | 单体 | 蛋白 1 | ADENOSINE-5'-DIPHOSPHATE × 1 | 与蛋白数一致 |
| 2 | 蛋白单体 | 单体 | 蛋白 1 | PHOSPHATE ION × 1 | 与蛋白数一致 |
| 3 | 蛋白单体 | 单体 | 蛋白 1 | PHOSPHATE ION × 1 | 与蛋白数一致 |
| UniProt名称 | VPS4_YEAST |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 A； PDB构建体 1–355； UniProt 83–437 作者链 B； PDB构建体 1–355； UniProt 83–437 作者链 C； PDB构建体 1–355； UniProt 83–437 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 2qpa |
| 沉积日期 deposition_date | 2007-07-23 |
| 结构标题 title | Crystal Structure of S.cerevisiae Vps4 in the presence of ADP |
| 关键词 keywords | ;ATPase domain, beta domain, C-terminal helix, ADP, ATP-binding, Endosome, Nucleotide-binding, Protein transport, Transport, Vacuole, PROTON TRANSPORT ;; PROTEIN TRANSPORT |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 24.50 Å |
| Rg（电子密度） | 23.58 Å |
| 总 Rg | 24.10 Å |
| 原子数 | 2203 |
| 残基数 | 305 |
| 排除体积 | 38998 ų |
| 最大 q | 0.500 Å⁻¹ |
| 结构域编号 domain_id | 2qpaA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 300 — P-loop containing nucleotide triphosphate hydrolases |
| 结构域编号 domain_id | 2qpaA02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 8 — Helicase, Ruva Protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 2qpaB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 300 — P-loop containing nucleotide triphosphate hydrolases |
| 结构域编号 domain_id | 2qpaB02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 8 — Helicase, Ruva Protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 2qpaC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 300 — P-loop containing nucleotide triphosphate hydrolases |
| 结构域编号 domain_id | 2qpaC02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 8 — Helicase, Ruva Protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 60 — |