2r9g

Crystal structure of the C-terminal fragment of AAA ATPase from Enterococcus faecium

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

AAA ATPase, central region

Enterococcus faecium

UniProt Q3XY27

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 4 ACETATE ION × 3 water × 4 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 4 ACETATE ION × 3 GLYCEROL × 2 water × 4 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 4 ACETATE ION × 3 GLYCEROL × 1 water × 4 Consistent with protein count
4 Protein homooligomer Homooligomer Protein 4 ACETATE ION × 3 GLYCEROL × 1 water × 4 Consistent with protein count
5 Protein homooligomer Homooligomer Protein 8 ACETATE ION × 6 GLYCEROL × 1 water × 8 Consistent with protein count
6 Protein homooligomer Homooligomer Protein 8 ACETATE ION × 6 GLYCEROL × 3 water × 8 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q3XY27_ENTFC
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 4–196; UniProt 230–422 Author chain B; PDBConstruct 4–196; UniProt 230–422 Author chain C; PDBConstruct 4–196; UniProt 230–422 Author chain D; PDBConstruct 4–196; UniProt 230–422 Author chain E; PDBConstruct 4–196; UniProt 230–422 Author chain F; PDBConstruct 4–196; UniProt 230–422 Author chain G; PDBConstruct 4–196; UniProt 230–422 Author chain H; PDBConstruct 4–196; UniProt 230–422 Author chain I; PDBConstruct 4–196; UniProt 230–422 Author chain J; PDBConstruct 4–196; UniProt 230–422 Author chain K; PDBConstruct 4–196; UniProt 230–422 Author chain L; PDBConstruct 4–196; UniProt 230–422 Author chain M; PDBConstruct 4–196; UniProt 230–422 Author chain N; PDBConstruct 4–196; UniProt 230–422 Author chain O; PDBConstruct 4–196; UniProt 230–422 Author chain P; PDBConstruct 4–196; UniProt 230–422

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2r9g
Deposition date deposition_date2007-09-12
Structure title titleCrystal structure of the C-terminal fragment of AAA ATPase from Enterococcus faecium
Keywords keywords;STRUCTURAL GENOMICS, ATPASE, PSI-2, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics, NYSGXRC, ATP-BINDING, NUCLEOTIDE-BINDING, HYDROLASE ;; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2r9g__assembly_3__model_1

Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2r9g__assembly_3__model_1 | I(q)

10-2 10-1 105 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2r9g__assembly_3__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)28.00 Å
Rg (electron density)26.63 Å
Total Rg27.34 Å
Atom count5722
Residues727
Excluded volume100920 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2r9g__assembly_1__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 2r9g__assembly_2__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 2r9g__assembly_3__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 2r9g__assembly_4__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 2r9g__assembly_5__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 2r9g__assembly_6__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 64 domains

SCOP 2.08 (32 domains)

Domain ID domain_idd2r9ga1
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9ga2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gb2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gb3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gc1
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gc2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gd2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gd3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9ge2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9ge3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gf2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gf3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gg2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gg3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gh2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gh3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gi2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gi3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gj2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gj3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gk2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gk3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gl2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gl3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gm2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gm3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gn2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gn3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9go2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9go3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd2r9gp2
Class classa — All alpha proteins
Fold Fold folda.80 — post-AAA+ oligomerization domain-like
Superfamily Superfamily superfamilya.80.1 — post-AAA+ oligomerization domain-like
Family Family familya.80.1.2 — MgsA/YrvN C-terminal domain-like
Domain ID domain_idd2r9gp3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (32 domains)

Domain ID domain_id2r9gA01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gA02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gB01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gB02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gC01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gC02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gD01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gD02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gE01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gE02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gF01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gF02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gG01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gG02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gH01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gH02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gI01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gI02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gJ01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gJ02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gK01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gK02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gL01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gL02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gM01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gM02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gN01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gN02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gO01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gO02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
Domain ID domain_id2r9gP01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2r9gP02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3710 — post-AAA+ oligomerization domain-like
Homologous superfamily homologous superfamily10 — DNA polymerase III clamp loader subunits, C-terminal domain
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7. Citations (1)