Vibrio cholerae
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白同源多聚体 | 同源多聚体 | 蛋白 2 | ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; × 2 water × 2 | 与蛋白数一致 |
| UniProt名称 | A5F1K1_VIBCH |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 A； PDB构建体 22–251； UniProt 23–252 作者链 B； PDB构建体 22–251； UniProt 23–252 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 2rde |
| 沉积日期 deposition_date | 2007-09-22 |
| 结构标题 title | Crystal structure of VCA0042 complexed with c-di-GMP |
| 关键词 keywords | ;c-di-gmp, vibrio cholerae, vca0042, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION ;; STRUCTURAL GENOMICS, UNKNOWN FUNCTION |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 24.99 Å |
| Rg（电子密度） | 24.17 Å |
| 总 Rg | 24.94 Å |
| 原子数 | 3653 |
| 残基数 | 449 |
| 排除体积 | 64923 ų |
| 最大 q | 0.500 Å⁻¹ |
| 结构域编号 domain_id | d2rdea1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.45 — Split barrel-like |
| 超家族 Superfamily superfamily | b.45.2 — PilZ domain-like |
| 家族 Family family | b.45.2.1 — PilZ domain |
| 结构域编号 domain_id | d2rdea2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.45 — Split barrel-like |
| 超家族 Superfamily superfamily | b.45.2 — PilZ domain-like |
| 家族 Family family | b.45.2.2 — PilZ domain-associated domain |
| 结构域编号 domain_id | d2rdeb1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.45 — Split barrel-like |
| 超家族 Superfamily superfamily | b.45.2 — PilZ domain-like |
| 家族 Family family | b.45.2.1 — PilZ domain |
| 结构域编号 domain_id | d2rdeb2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.45 — Split barrel-like |
| 超家族 Superfamily superfamily | b.45.2 — PilZ domain-like |
| 家族 Family family | b.45.2.2 — PilZ domain-associated domain |
| 结构域编号 domain_id | 2rdeA01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 30 — Roll |
| 拓扑 Topology topology | 110 — Pnp Oxidase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Electron Transport, Fmn-binding Protein; Chain A |
| 结构域编号 domain_id | 2rdeA02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 10 — Thrombin, subunit H |
| 同源超家族 H-superfamily homologous superfamily | 220 — predicted glycosyltransferase like domains |
| 结构域编号 domain_id | 2rdeB01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 30 — Roll |
| 拓扑 Topology topology | 110 — Pnp Oxidase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Electron Transport, Fmn-binding Protein; Chain A |
| 结构域编号 domain_id | 2rdeB02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 10 — Thrombin, subunit H |
| 同源超家族 H-superfamily homologous superfamily | 220 — predicted glycosyltransferase like domains |