2wva

Structural insights into the pre-reaction state of pyruvate decarboxylase from Zymomonas mobilis

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

PYRUVATE DECARBOXYLASE

ZYMOMONAS MOBILIS

UniProt P06672

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 4 2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYL TRIHYDROGEN DIPHOSPHATE × 4 MAGNESIUM ION × 4 PYRUVIC ACID × 2 water × 4 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 4 2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYL TRIHYDROGEN DIPHOSPHATE × 4 MAGNESIUM ION × 4 PYRUVIC ACID × 1 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PDC_ZYMMO
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–568; UniProt 1–568 作者链 B; PDB构建体 1–568; UniProt 1–568 作者链 E; PDB构建体 1–568; UniProt 1–568 作者链 F; PDB构建体 1–568; UniProt 1–568 作者链 V; PDB构建体 1–568; UniProt 1–568 作者链 X; PDB构建体 1–568; UniProt 1–568 作者链 Y; PDB构建体 1–568; UniProt 1–568 作者链 Z; PDB构建体 1–568; UniProt 1–568

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id2wva
沉积日期 deposition_date2009-10-15
结构标题 titleStructural insights into the pre-reaction state of pyruvate decarboxylase from Zymomonas mobilis
关键词 keywordsTHIAMIN DIPHOSPHATE, LYASE, FLAVOPROTEIN, METAL-BINDING, ALCOHOL FERMENTATION; LYASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2wva__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2wva__assembly_2__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2wva__assembly_2__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)38.01 Å
Rg(电子密度)37.24 Å
总 Rg37.84 Å
原子数17178
残基数2260
排除体积305850 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2wva__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 2wva__assembly_2__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (5)

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6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd2wvaa1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvaa2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvaa3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvab1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvab2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvab3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvae1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvae2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvae3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvaf1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvaf2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvaf3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvav1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvav2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvav3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvax1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvax2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvax3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvay1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvay2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvay3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvaz1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches
结构域编号 domain_idd2wvaz2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.31 — DHS-like NAD/FAD-binding domain
超家族 Superfamily superfamilyc.31.1 — DHS-like NAD/FAD-binding domain
家族 Family familyc.31.1.0 — automated matches
结构域编号 domain_idd2wvaz3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.36 — Thiamin diphosphate-binding fold (THDP-binding)
超家族 Superfamily superfamilyc.36.1 — Thiamin diphosphate-binding fold (THDP-binding)
家族 Family familyc.36.1.0 — automated matches

CATH v4.4 (24 domains)

结构域编号 domain_id2wvaA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaA03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaB03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaE01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaE02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaE03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaF01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaF02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaF03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaV01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaV02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaV03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaX01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaX02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaX03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaY01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaY02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaY03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaZ01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
结构域编号 domain_id2wvaZ02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1220 — TPP-binding domain
结构域编号 domain_id2wvaZ03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily970 — Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains
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7. 引用文献 (1)