GEOBACILLUS STEAROTHERMOPHILUS
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白–DNA | 单体 | 蛋白 1 DNA 2 | 5'-D(*GP*AP*CP*CP*AP*AP*CP*CP*CP*TP)-3' × 1 5'-D(*AP*GP*GP*GP*PBTP*THM*GP*GP*TP*CP)-3' × 1 SULFATE ION × 2 water × 1 | 与全部聚合物一致 |
| UniProt名称 | D7D223_GEOSC |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 A； PDB构建体 1–580； UniProt 297–876 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 2y1i |
| 沉积日期 deposition_date | 2010-12-08 |
| 结构标题 title | Crystal structure of a S-diastereomer analogue of the spore photoproduct in complex with fragment DNA polymerase I from Bacillus stearothermophilus |
| 关键词 keywords | TRANSFERASE-DNA COMPLEX, DNA REPAIR, SPORE PHOTOPRODUCT, PHOTOLESION, UV LESION; TRANSFERASE/DNA |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 27.41 Å |
| Rg（电子密度） | 26.65 Å |
| 总 Rg | 27.39 Å |
| 原子数 | 5061 |
| 残基数 | 598 |
| 排除体积 | 89201 ų |
| 最大 q | 0.500 Å⁻¹ |
| 结构域编号 domain_id | 2y1iA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 420 — Nucleotidyltransferase; domain 5 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Ribonuclease H-like superfamily/Ribonuclease H |
| 结构域编号 domain_id | 2y1iA02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 1060 — Taq DNA Polymerase; Chain T, domain 4 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Taq DNA Polymerase; Chain T, domain 4 |
| 结构域编号 domain_id | 2y1iA03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 370 — |
| 结构域编号 domain_id | 2y1iA04 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 150 — DNA polymerase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 20 — 5' to 3' exonuclease, C-terminal subdomain |