3a5c

Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase

Method: X-RAY DIFFRACTION

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1. 蛋白身份与相关结构 Protein Identity & Related Structures

V-type ATP synthase alpha chain

物种未注明

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase beta chain × 3 （Q56404） V-type ATP synthase subunit D × 1 （O87880） V-type ATP synthase subunit F × 1 （P74903） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase beta chain × 3 （Q56404） V-type ATP synthase subunit D × 1 （O87880） V-type ATP synthase subunit F × 1 （P74903） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	VATA_THET8
Isoform	—
PDB实体	1
链与序列区间	作者链 A； PDB构建体 1–578； UniProt 1–578 作者链 B； PDB构建体 1–578； UniProt 1–578 作者链 C； PDB构建体 1–578； UniProt 1–578 作者链 I； PDB构建体 1–578； UniProt 1–578 作者链 J； PDB构建体 1–578； UniProt 1–578 作者链 K； PDB构建体 1–578； UniProt 1–578

V-type ATP synthase beta chain

物种未注明

UniProt Q56404

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase alpha chain × 3 （Q56403） V-type ATP synthase subunit D × 1 （O87880） V-type ATP synthase subunit F × 1 （P74903） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase alpha chain × 3 （Q56403） V-type ATP synthase subunit D × 1 （O87880） V-type ATP synthase subunit F × 1 （P74903） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	VATB_THET8
Isoform	—
PDB实体	2
链与序列区间	作者链 D； PDB构建体 1–478； UniProt 1–478 作者链 E； PDB构建体 1–478； UniProt 1–478 作者链 F； PDB构建体 1–478； UniProt 1–478 作者链 L； PDB构建体 1–478； UniProt 1–478 作者链 M； PDB构建体 1–478； UniProt 1–478 作者链 N； PDB构建体 1–478； UniProt 1–478

V-type ATP synthase subunit D

物种未注明

UniProt O87880

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase alpha chain × 3 （Q56403） V-type ATP synthase beta chain × 3 （Q56404） V-type ATP synthase subunit F × 1 （P74903） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase alpha chain × 3 （Q56403） V-type ATP synthase beta chain × 3 （Q56404） V-type ATP synthase subunit F × 1 （P74903） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	VATD_THET8
Isoform	—
PDB实体	3
链与序列区间	作者链 G； PDB构建体 1–223； UniProt 1–223 作者链 O； PDB构建体 1–223； UniProt 1–223

V-type ATP synthase subunit F

物种未注明

UniProt P74903

当前结构中的状态

Assembly	物理组成	蛋白状态	分子拷贝数	共同组分	数据核对
1	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase alpha chain × 3 （Q56403） V-type ATP synthase beta chain × 3 （Q56404） V-type ATP synthase subunit D × 1 （O87880） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致
2	蛋白异源复合物	异源复合物	蛋白 8	V-type ATP synthase alpha chain × 3 （Q56403） V-type ATP synthase beta chain × 3 （Q56404） V-type ATP synthase subunit D × 1 （O87880） ADENOSINE-5'-DIPHOSPHATE × 2	与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据

UniProt名称	VATF_THET8
Isoform	—
PDB实体	4
链与序列区间	作者链 H； PDB构建体 1–104； UniProt 1–104 作者链 P； PDB构建体 1–104； UniProt 1–104

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id	3a5c
沉积日期 deposition_date	2009-08-06
结构标题 title	Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase
关键词 keywords	;V-ATPase, asymmetric, rotation, vacuolar type, HYDROLASE, ATP synthesis, ATP-binding, Hydrogen ion transport, Ion transport, Nucleotide-binding, Transport ;; HYDROLASE
实验方法 method	X-RAY DIFFRACTION

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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3a5c__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3a5c__assembly_2__model_1 | I(q)

100 个绘图点；横轴和纵轴均采用对数尺度。

3a5c__assembly_2__model_1 | P(r) · Pending

P(r) 将按相同 assembly/model 分别计算和展示。

Rg（Guinier）	44.40 Å
Rg（电子密度）	43.81 Å
总 Rg	44.16 Å
原子数	16094
残基数	3266
排除体积	258190 Å³
最大 q	0.500 Å⁻¹

Assembly	Model	结构单元	聚集说明	状态	CRYSOL	操作
1	1	`3a5c__assembly_1__model_1`	octameric （8）	成功	4.1.3-1-20251215 (887e7ef)	查看下载
2	1	`3a5c__assembly_2__model_1`	octameric （8）	成功	4.1.3-1-20251215 (887e7ef)	查看下载

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (5)

实体 1 Entity 1 polymer

描述 description	V-type ATP synthase alpha chain
分子量 formula_weight	63700.0 kDa
EC 编号 ec_number	3.6.3.14
来源方法 src_method	nat
拷贝数 entity_count	6

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	A,B,C,I,J,K
原子数 atom_count	32188

MIQGVIQKIAGPAVIAKGMLGARMYDICKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKTVTQQSLAKWSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMILAFYKEAEAAIKRGVSIDEILQLPVLERIGRARYVSEEEFPAYFEEAMKEIQGAFKALA

实体 2 Entity 2 polymer

描述 description	V-type ATP synthase beta chain
分子量 formula_weight	53219.5 kDa
EC 编号 ec_number	3.6.3.14
来源方法 src_method	nat
拷贝数 entity_count	6

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	D,E,F,L,M,N

MDLLKKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQGQQNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYYGQKLEEIWGAPQALD

实体 3 Entity 3 polymer

描述 description	V-type ATP synthase subunit D
分子量 formula_weight	24715.6 kDa
EC 编号 ec_number	3.6.3.14
来源方法 src_method	nat
拷贝数 entity_count	2

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	G,O

MSQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL

实体 4 Entity 4 polymer

描述 description	V-type ATP synthase subunit F
分子量 formula_weight	11294.9 kDa
EC 编号 ec_number	3.6.3.14
来源方法 src_method	nat
拷贝数 entity_count	2

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	H,P

MAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTIGFDIKL

实体 5 Entity 5 non-polymer

描述 description	ADENOSINE-5'-DIPHOSPHATE
分子量 formula_weight	427.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	4

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6. 折叠分类 (SCOP + CATH) 46 domains

SCOP 2.08 (46 domains)

结构域编号 domain_id	d3a5ca1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5ca2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5ca3
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.84 — Barrel-sandwich hybrid
超家族 Superfamily superfamily	b.84.5 — V1 ATP synthase A subunit, bulge domain-like
家族 Family family	b.84.5.1 — V1 ATP synthase A subunit, bulge domain-like

结构域编号 domain_id	d3a5ca4
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cb1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cb2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cb3
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.84 — Barrel-sandwich hybrid
超家族 Superfamily superfamily	b.84.5 — V1 ATP synthase A subunit, bulge domain-like
家族 Family family	b.84.5.1 — V1 ATP synthase A subunit, bulge domain-like

结构域编号 domain_id	d3a5cb4
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cc1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cc2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cc3
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.84 — Barrel-sandwich hybrid
超家族 Superfamily superfamily	b.84.5 — V1 ATP synthase A subunit, bulge domain-like
家族 Family family	b.84.5.1 — V1 ATP synthase A subunit, bulge domain-like

结构域编号 domain_id	d3a5cc4
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cd1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cd2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cd3
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5ce1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5ce2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5ce3
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cf1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cf2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cf3
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cg_
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.4 — Antiparallel coiled-coil
超家族 Superfamily superfamily	h.4.20 — V-type ATPase central rotor subunit D
家族 Family family	h.4.20.1 — V1 ATP synthase D subunit

结构域编号 domain_id	d3a5ch_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.149 — AtpF-like
超家族 Superfamily superfamily	c.149.1 — AtpF-like
家族 Family family	c.149.1.1 — AtpF-like

结构域编号 domain_id	d3a5ci1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5ci2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5ci3
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.84 — Barrel-sandwich hybrid
超家族 Superfamily superfamily	b.84.5 — V1 ATP synthase A subunit, bulge domain-like
家族 Family family	b.84.5.1 — V1 ATP synthase A subunit, bulge domain-like

结构域编号 domain_id	d3a5ci4
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cj1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cj2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cj3
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.84 — Barrel-sandwich hybrid
超家族 Superfamily superfamily	b.84.5 — V1 ATP synthase A subunit, bulge domain-like
家族 Family family	b.84.5.1 — V1 ATP synthase A subunit, bulge domain-like

结构域编号 domain_id	d3a5cj4
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5ck1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5ck2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5ck3
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.84 — Barrel-sandwich hybrid
超家族 Superfamily superfamily	b.84.5 — V1 ATP synthase A subunit, bulge domain-like
家族 Family family	b.84.5.1 — V1 ATP synthase A subunit, bulge domain-like

结构域编号 domain_id	d3a5ck4
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cl1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cl2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cl3
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cm1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cm2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cm3
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5cn1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamily	b.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	b.49.1.2 — N-terminal domain of A and B subunits of V1 ATP synthase

结构域编号 domain_id	d3a5cn2
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamily	c.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family family	c.37.1.11 — RecA protein-like (ATPase-domain)

结构域编号 domain_id	d3a5cn3
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.69 — Left-handed superhelix
超家族 Superfamily superfamily	a.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family family	a.69.1.2 — C-terminal domain of A and B subunits of V1 ATP synthase and A1 ATP sythase

结构域编号 domain_id	d3a5co_
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.4 — Antiparallel coiled-coil
超家族 Superfamily superfamily	h.4.20 — V-type ATPase central rotor subunit D
家族 Family family	h.4.20.1 — V1 ATP synthase D subunit

结构域编号 domain_id	d3a5cp_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.149 — AtpF-like
超家族 Superfamily superfamily	c.149.1 — AtpF-like
家族 Family family	c.149.1.1 — AtpF-like

▶

晶胞边长 a length_a	381.578 Å
晶胞边长 b length_b	381.578 Å
晶胞边长 c length_c	147.672 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	120.00 °
晶胞分子数 Z z_pdb	36

空间群 space_group	P 3 2 1
空间群编号 int_tables_number	150
晶系 crystal_system	—

分辨率 resolution	4.510 Å
最低分辨率 resolution_low	29.920 Å
R 因子 r_factor	—
R_work r_work	0.4290
R_free r_free	0.4370

Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase

1. 蛋白身份与相关结构 Protein Identity & Related Structures

V-type ATP synthase alpha chain

当前结构中的状态

数据库中的同蛋白其他状态

V-type ATP synthase beta chain

当前结构中的状态

数据库中的同蛋白其他状态

V-type ATP synthase subunit D

当前结构中的状态

数据库中的同蛋白其他状态

V-type ATP synthase subunit F

当前结构中的状态

数据库中的同蛋白其他状态

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

3a5c__assembly_2__model_1

3a5c__assembly_2__model_1 | I(q)

3a5c__assembly_2__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (5)

实体 1 Entity 1 polymer

聚合物 Polymer

实体 2 Entity 2 polymer

聚合物 Polymer

实体 3 Entity 3 polymer

聚合物 Polymer

实体 4 Entity 4 polymer

聚合物 Polymer

实体 5 Entity 5 non-polymer

6. 折叠分类 (SCOP + CATH) 46 domains

SCOP 2.08 (46 domains)

7. 引用文献 (1)

Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase

1. 蛋白身份与相关结构 Protein Identity & Related Structures

V-type ATP synthase alpha chain

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

V-type ATP synthase beta chain

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

V-type ATP synthase subunit D

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

V-type ATP synthase subunit F

当前结构中的状态

数据库中的同蛋白其他状态

单体

同源二聚体

同源四聚体

其他同源多聚体

异源或核酸复合物

2. 结构基本信息 2. Structure Basics

3. Official assembly/model 理论 SAXS Official SAXS Profiles

3a5c__assembly_2__model_1

3a5c__assembly_2__model_1 | I(q)

3a5c__assembly_2__model_1 | P(r) · Pending

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合物信息 Entities & Polymers (5)

实体 1 Entity 1 polymer

聚合物 Polymer

实体 2 Entity 2 polymer

聚合物 Polymer

实体 3 Entity 3 polymer

聚合物 Polymer

实体 4 Entity 4 polymer

聚合物 Polymer

实体 5 Entity 5 non-polymer

6. 折叠分类 (SCOP + CATH) 46 domains

SCOP 2.08 (46 domains)

7. 引用文献 (1)