3ac0

Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Beta-glucosidase I

Kluyveromyces marxianus

UniProt D1GCC6

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 4 beta-D-glucopyranose × 4 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 D1GCC6_KLUMA
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–845; UniProt 1–845 作者链 B; PDB构建体 1–845; UniProt 1–845 作者链 C; PDB构建体 1–845; UniProt 1–845 作者链 D; PDB构建体 1–845; UniProt 1–845

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id3ac0
沉积日期 deposition_date2009-12-25
结构标题 titleCrystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose
关键词 keywordsGlycoside hydrolase family3 beta-glucosidase, PA14 domain, HYDROLASE; HYDROLASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3ac0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3ac0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

3ac0__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)48.73 Å
Rg(电子密度)48.37 Å
总 Rg48.62 Å
原子数26099
残基数3326
排除体积464190 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 3ac0__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (3)

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6. 折叠分类 (SCOP + CATH) 32 domains

SCOP 2.08 (16 domains)

结构域编号 domain_idd3ac0a1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.7 — NagZ-like
结构域编号 domain_idd3ac0a2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.23 — Flavodoxin-like
超家族 Superfamily superfamilyc.23.11 — Beta-D-glucan exohydrolase, C-terminal domain-like
家族 Family familyc.23.11.1 — Beta-D-glucan exohydrolase, C-terminal domain-like
结构域编号 domain_idd3ac0a3
类 Class classb — All beta proteins
折叠类型 Fold foldb.179 — Anthrax protective antigen N-terminal-like
超家族 Superfamily superfamilyb.179.1 — PA14-like
家族 Family familyb.179.1.1 — PA14
结构域编号 domain_idd3ac0a4
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.31 — Fibronectin III-like
家族 Family familyb.1.31.1 — Fibronectin III-like
结构域编号 domain_idd3ac0b1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.7 — NagZ-like
结构域编号 domain_idd3ac0b2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.23 — Flavodoxin-like
超家族 Superfamily superfamilyc.23.11 — Beta-D-glucan exohydrolase, C-terminal domain-like
家族 Family familyc.23.11.1 — Beta-D-glucan exohydrolase, C-terminal domain-like
结构域编号 domain_idd3ac0b3
类 Class classb — All beta proteins
折叠类型 Fold foldb.179 — Anthrax protective antigen N-terminal-like
超家族 Superfamily superfamilyb.179.1 — PA14-like
家族 Family familyb.179.1.1 — PA14
结构域编号 domain_idd3ac0b4
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.31 — Fibronectin III-like
家族 Family familyb.1.31.1 — Fibronectin III-like
结构域编号 domain_idd3ac0c1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.7 — NagZ-like
结构域编号 domain_idd3ac0c2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.23 — Flavodoxin-like
超家族 Superfamily superfamilyc.23.11 — Beta-D-glucan exohydrolase, C-terminal domain-like
家族 Family familyc.23.11.1 — Beta-D-glucan exohydrolase, C-terminal domain-like
结构域编号 domain_idd3ac0c3
类 Class classb — All beta proteins
折叠类型 Fold foldb.179 — Anthrax protective antigen N-terminal-like
超家族 Superfamily superfamilyb.179.1 — PA14-like
家族 Family familyb.179.1.1 — PA14
结构域编号 domain_idd3ac0c4
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.31 — Fibronectin III-like
家族 Family familyb.1.31.1 — Fibronectin III-like
结构域编号 domain_idd3ac0d1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.8 — (Trans)glycosidases
家族 Family familyc.1.8.7 — NagZ-like
结构域编号 domain_idd3ac0d2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.23 — Flavodoxin-like
超家族 Superfamily superfamilyc.23.11 — Beta-D-glucan exohydrolase, C-terminal domain-like
家族 Family familyc.23.11.1 — Beta-D-glucan exohydrolase, C-terminal domain-like
结构域编号 domain_idd3ac0d3
类 Class classb — All beta proteins
折叠类型 Fold foldb.179 — Anthrax protective antigen N-terminal-like
超家族 Superfamily superfamilyb.179.1 — PA14-like
家族 Family familyb.179.1.1 — PA14
结构域编号 domain_idd3ac0d4
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.31 — Fibronectin III-like
家族 Family familyb.1.31.1 — Fibronectin III-like

CATH v4.4 (16 domains)

结构域编号 domain_id3ac0A01
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily300 — Glycoside hydrolase, family 3, N-terminal domain
结构域编号 domain_id3ac0A02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1700 — Glycoside hydrolase family 3 C-terminal domain
结构域编号 domain_id3ac0A03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily260 — Galactose-binding domain-like
结构域编号 domain_id3ac0A04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id3ac0B01
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily300 — Glycoside hydrolase, family 3, N-terminal domain
结构域编号 domain_id3ac0B02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1700 — Glycoside hydrolase family 3 C-terminal domain
结构域编号 domain_id3ac0B03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily260 — Galactose-binding domain-like
结构域编号 domain_id3ac0B04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id3ac0C01
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily300 — Glycoside hydrolase, family 3, N-terminal domain
结构域编号 domain_id3ac0C02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1700 — Glycoside hydrolase family 3 C-terminal domain
结构域编号 domain_id3ac0C03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily260 — Galactose-binding domain-like
结构域编号 domain_id3ac0C04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id3ac0D01
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily300 — Glycoside hydrolase, family 3, N-terminal domain
结构域编号 domain_id3ac0D02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily1700 — Glycoside hydrolase family 3 C-terminal domain
结构域编号 domain_id3ac0D03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily260 — Galactose-binding domain-like
结构域编号 domain_id3ac0D04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
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7. 引用文献 (2)