3bp9

Structure of B-tropic MLV capsid N-terminal domain

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Gag protein

Murine leukemia virus

UniProt Q9WHV6

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 6 ISOPROPYL ALCOHOL × 6 GLYCEROL × 1 water × 6 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 6 ISOPROPYL ALCOHOL × 5 GLYCEROL × 1 water × 6 与蛋白数一致
3 蛋白同源多聚体 同源多聚体 蛋白 6 water × 6 与蛋白数一致
4 蛋白同源多聚体 同源多聚体 蛋白 6 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q9WHV6_9GAMR
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–132; UniProt 215–346 作者链 B; PDB构建体 1–132; UniProt 215–346 作者链 C; PDB构建体 1–132; UniProt 215–346 作者链 D; PDB构建体 1–132; UniProt 215–346 作者链 E; PDB构建体 1–132; UniProt 215–346 作者链 F; PDB构建体 1–132; UniProt 215–346 作者链 G; PDB构建体 1–132; UniProt 215–346 作者链 H; PDB构建体 1–132; UniProt 215–346 作者链 I; PDB构建体 1–132; UniProt 215–346 作者链 J; PDB构建体 1–132; UniProt 215–346 作者链 K; PDB构建体 1–132; UniProt 215–346 作者链 L; PDB构建体 1–132; UniProt 215–346 作者链 M; PDB构建体 1–132; UniProt 215–346 作者链 N; PDB构建体 1–132; UniProt 215–346 作者链 O; PDB构建体 1–132; UniProt 215–346 作者链 P; PDB构建体 1–132; UniProt 215–346 作者链 Q; PDB构建体 1–132; UniProt 215–346 作者链 R; PDB构建体 1–132; UniProt 215–346 作者链 S; PDB构建体 1–132; UniProt 215–346 作者链 T; PDB构建体 1–132; UniProt 215–346 作者链 U; PDB构建体 1–132; UniProt 215–346 作者链 V; PDB构建体 1–132; UniProt 215–346 作者链 X; PDB构建体 1–132; UniProt 215–346 作者链 Y; PDB构建体 1–132; UniProt 215–346

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id3bp9
沉积日期 deposition_date2007-12-18
结构标题 titleStructure of B-tropic MLV capsid N-terminal domain
关键词 keywordsCapsid, Hexamer, MLV, Metal-binding, Zinc-finger, VIRAL PROTEIN; VIRAL PROTEIN
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3bp9__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3bp9__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

3bp9__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)30.44 Å
Rg(电子密度)29.36 Å
总 Rg30.18 Å
原子数6231
残基数782
排除体积109550 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 3bp9__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 3bp9__assembly_2__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
3 1 3bp9__assembly_3__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
4 1 3bp9__assembly_4__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd3bp9a_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9b_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9c_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9d_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9e_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9f_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9g_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9h_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9i_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9j_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9k_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9l_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9m_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9n_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9o_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9p_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9q_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9r_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9s_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9t_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9u_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9v_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9x_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain
结构域编号 domain_idd3bp9y_
类 Class classa — All alpha proteins
折叠类型 Fold folda.73 — Retrovirus capsid protein, N-terminal core domain
超家族 Superfamily superfamilya.73.1 — Retrovirus capsid protein, N-terminal core domain
家族 Family familya.73.1.1 — Retrovirus capsid protein, N-terminal core domain

CATH v4.4 (24 domains)

结构域编号 domain_id3bp9A00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9B00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9C00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9D00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9E00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9F00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9G00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9H00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9I00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9J00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9K00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9L00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9M00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9N00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9O00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9P00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9Q00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9R00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9S00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9T00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9U00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9V00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9X00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
结构域编号 domain_id3bp9Y00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology375 — Human Immunodeficiency Virus Type 1 Capsid Protein
同源超家族 H-superfamily homologous superfamily10 — Human Immunodeficiency Virus Type 1 Capsid Protein
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7. 引用文献 (1)