Homo sapiens
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | water × 1 | Consistent with protein count |
| UniProt name | HECD1_HUMAN |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 19–89； UniProt 1273–1343 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 3dkm |
| Deposition date deposition_date | 2008-06-25 |
| Structure title title | Crystal structure of the HECTD1 CPH domain |
| Keywords keywords | ;UBL CONJUGATION, UBL CONJUGATION PATHWAY, STRUCTURAL GENOMICS CONSORTIUM, SGC;, ANK repeat, Ligase, NPPSFA, National Project on Protein Structural and Functional Analyses ;; LIGASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 12.85 Å |
| Rg (electron density) | 11.54 Å |
| Total Rg | 12.91 Å |
| Atom count | 613 |
| Residues | 79 |
| Excluded volume | 10696 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d3dkma1 |
| Class class | b — All beta proteins |
| Fold Fold fold | b.34 — SH3-like barrel |
| Superfamily Superfamily superfamily | b.34.19 — Mib/herc2 domain-like |
| Family Family family | b.34.19.1 — Mib/herc2 domain |
| Domain ID domain_id | d3dkma2 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | 3dkmA00 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 30 — Roll |
| Topology topology | 30 — SH3 type barrels. |
| Homologous superfamily homologous superfamily | 40 — SH3 Domains |