Staphylococcus aureus
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白单体 | 单体 | 蛋白 1 | SULFATE ION × 15 | 与蛋白数一致 |
| 2 | 蛋白单体 | 单体 | 蛋白 1 | SULFATE ION × 13 | 与蛋白数一致 |
| 3 | 蛋白单体 | 单体 | 蛋白 1 | SULFATE ION × 9 | 与蛋白数一致 |
| 4 | 蛋白单体 | 单体 | 蛋白 1 | SULFATE ION × 9 LAURYL DIMETHYLAMINE-N-OXIDE × 1 | 与蛋白数一致 |
| UniProt名称 | Q5HFX3_STAAC |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 A； PDB构建体 1–625； UniProt 68–692 作者链 B； PDB构建体 1–625； UniProt 68–692 作者链 C； PDB构建体 1–625； UniProt 68–692 作者链 D； PDB构建体 1–625； UniProt 68–692 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 3dwk |
| 沉积日期 deposition_date | 2008-07-22 |
| 结构标题 title | Identification of Dynamic Structural Motifs Involved in Peptidoglycan Glycosyltransfer |
| 关键词 keywords | ;lysozyme-fold transpeptidase fold pi-helix, Cell shape, Cell wall biogenesis/degradation, Membrane, Peptidoglycan synthesis, TRANSFERASE ;; TRANSFERASE |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 30.74 Å |
| Rg（电子密度） | 30.17 Å |
| 总 Rg | 30.80 Å |
| 原子数 | 4939 |
| 残基数 | 621 |
| 排除体积 | 86253 ų |
| 最大 q | 0.500 Å⁻¹ |
| Assembly | Model | 结构单元 | 聚集说明 | 状态 | CRYSOL | 操作 |
|---|---|---|---|---|---|---|
| 1 | 1 | 3dwk__assembly_1__model_1 |
monomeric （1） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 2 | 1 | 3dwk__assembly_2__model_1 |
monomeric （1） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 3 | 1 | 3dwk__assembly_3__model_1 |
monomeric （1） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 4 | 1 | 3dwk__assembly_4__model_1 |
monomeric （1） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 结构域编号 domain_id | d3dwka1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.2 — Lysozyme-like |
| 超家族 Superfamily superfamily | d.2.1 — Lysozyme-like |
| 家族 Family family | d.2.1.10 — PBP transglycosylase domain-like |
| 结构域编号 domain_id | d3dwka2 |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.3 — beta-lactamase/transpeptidase-like |
| 超家族 Superfamily superfamily | e.3.1 — beta-lactamase/transpeptidase-like |
| 家族 Family family | e.3.1.1 — beta-Lactamase/D-ala carboxypeptidase |
| 结构域编号 domain_id | d3dwkb1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.2 — Lysozyme-like |
| 超家族 Superfamily superfamily | d.2.1 — Lysozyme-like |
| 家族 Family family | d.2.1.10 — PBP transglycosylase domain-like |
| 结构域编号 domain_id | d3dwkb2 |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.3 — beta-lactamase/transpeptidase-like |
| 超家族 Superfamily superfamily | e.3.1 — beta-lactamase/transpeptidase-like |
| 家族 Family family | e.3.1.1 — beta-Lactamase/D-ala carboxypeptidase |
| 结构域编号 domain_id | d3dwkc1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.2 — Lysozyme-like |
| 超家族 Superfamily superfamily | d.2.1 — Lysozyme-like |
| 家族 Family family | d.2.1.10 — PBP transglycosylase domain-like |
| 结构域编号 domain_id | d3dwkc2 |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.3 — beta-lactamase/transpeptidase-like |
| 超家族 Superfamily superfamily | e.3.1 — beta-lactamase/transpeptidase-like |
| 家族 Family family | e.3.1.1 — beta-Lactamase/D-ala carboxypeptidase |
| 结构域编号 domain_id | d3dwkd1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.2 — Lysozyme-like |
| 超家族 Superfamily superfamily | d.2.1 — Lysozyme-like |
| 家族 Family family | d.2.1.10 — PBP transglycosylase domain-like |
| 结构域编号 domain_id | d3dwkd2 |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.3 — beta-lactamase/transpeptidase-like |
| 超家族 Superfamily superfamily | e.3.1 — beta-lactamase/transpeptidase-like |
| 家族 Family family | e.3.1.1 — beta-Lactamase/D-ala carboxypeptidase |
| 结构域编号 domain_id | 3dwkA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 1310 — Penicillin-binding protein 2a (Domain 2) |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3dwkA02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 3810 — Penicillin binding protein transpeptidase fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Biosynthetic peptidoglycan transglycosylase-like |
| 结构域编号 domain_id | 3dwkA03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 710 — Beta-lactamase |
| 同源超家族 H-superfamily homologous superfamily | 10 — DD-peptidase/beta-lactamase superfamily |
| 结构域编号 domain_id | 3dwkB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 1310 — Penicillin-binding protein 2a (Domain 2) |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3dwkB02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 3810 — Penicillin binding protein transpeptidase fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Biosynthetic peptidoglycan transglycosylase-like |
| 结构域编号 domain_id | 3dwkB03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 710 — Beta-lactamase |
| 同源超家族 H-superfamily homologous superfamily | 10 — DD-peptidase/beta-lactamase superfamily |
| 结构域编号 domain_id | 3dwkC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 1310 — Penicillin-binding protein 2a (Domain 2) |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3dwkC02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 3810 — Penicillin binding protein transpeptidase fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Biosynthetic peptidoglycan transglycosylase-like |
| 结构域编号 domain_id | 3dwkC03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 710 — Beta-lactamase |
| 同源超家族 H-superfamily homologous superfamily | 10 — DD-peptidase/beta-lactamase superfamily |
| 结构域编号 domain_id | 3dwkD01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 1310 — Penicillin-binding protein 2a (Domain 2) |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3dwkD02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 3810 — Penicillin binding protein transpeptidase fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Biosynthetic peptidoglycan transglycosylase-like |
| 结构域编号 domain_id | 3dwkD03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 710 — Beta-lactamase |
| 同源超家族 H-superfamily homologous superfamily | 10 — DD-peptidase/beta-lactamase superfamily |