Yersinia pestis
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein homooligomer | Homooligomer | Protein 3 | water × 3 | Consistent with protein count |
| UniProt name | ISPF_YERPE |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 4–165； UniProt 1–162 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 3f6m |
| Deposition date deposition_date | 2008-11-06 |
| Structure title title | Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from Yersinia pestis |
| Keywords keywords | ;alpha-beta structure, structural genomics of infectious diseases, Isoprene biosynthesis, Lyase, Metal-binding, Center for Structural Genomics of Infectious Diseases, CSGID ;; LYASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 22.05 Å |
| Rg (electron density) | 20.88 Å |
| Total Rg | 21.70 Å |
| Atom count | 3591 |
| Residues | 471 |
| Excluded volume | 64166 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d3f6ma1 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.79 — Bacillus chorismate mutase-like |
| Superfamily Superfamily superfamily | d.79.5 — IpsF-like |
| Family Family family | d.79.5.1 — IpsF-like |
| Domain ID domain_id | d3f6ma2 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | 3f6mA00 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 1330 — 60s Ribosomal Protein L30; Chain: A; |
| Homologous superfamily homologous superfamily | 50 — 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |