3fwl

Crystal Structure of the Full-Length Transglycosylase PBP1b from Escherichia coli

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Penicillin-binding protein 1B

Escherichia coli

UniProt P02919

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 MOENOMYCIN × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PBPB_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 5–751; UniProt 58–804

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3fwl
Deposition date deposition_date2009-01-19
Structure title titleCrystal Structure of the Full-Length Transglycosylase PBP1b from Escherichia coli
Keywords keywords;bacterial cell wall synthesis, penicillin-binding protein, antibiotics design, Alternative initiation, Antibiotic resistance, Cell inner membrane, Cell membrane, Cell shape, Cell wall biogenesis/degradation, Glycosyltransferase, Hydrolase, Membrane, Multifunctional enzyme, Peptidoglycan synthesis, Signal-anchor, Transferase, Transmembrane ;; TRANSFERASE, HYDROLASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3fwl__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3fwl__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3fwl__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)32.24 Å
Rg (electron density)32.65 Å
Total Rg33.01 Å
Atom count5641
Residues683
Excluded volume101050 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3fwl__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id3fwlA01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily100 — Cytochrome c1, transmembrane anchor, C-terminal
Domain ID domain_id3fwlA02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology710 — Beta-lactamase
Homologous superfamily homologous superfamily10 — DD-peptidase/beta-lactamase superfamily
Domain ID domain_id3fwlA03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology2060 — Penicillin-binding protein 1b fold
Homologous superfamily homologous superfamily10 — Penicillin-binding protein 1b domain
Domain ID domain_id3fwlA04
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3810 — Penicillin binding protein transpeptidase fold
Homologous superfamily homologous superfamily10 — Biosynthetic peptidoglycan transglycosylase-like
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7. Citations (1)