3gyx
Crystal structure of adenylylsulfate reductase from Desulfovibrio gigas
1. Protein Identity and Related Structures Protein Identity & Related Structures
No usable UniProt protein identity is available for this entry.
The relationship tables retain this entry's assembly and composition data, but cross-PDB links for the same protein cannot be established reliably without a unified protein identity.
Assembly Composition of the Current Entry
| Assembly | Physical composition | Protein state | 蛋白 / DNA / RNA / 其他Polymer | Data consistency |
|---|---|---|---|---|
| 1 | Protein heterocomplex | Heteromer | 2 / 0 / 0 / 0 | Consistent with protein count |
| 2 | Protein heterocomplex | Heteromer | 2 / 0 / 0 / 0 | Consistent with protein count |
| 3 | Protein heterocomplex | Heteromer | 2 / 0 / 0 / 0 | Consistent with protein count |
| 4 | Protein heterocomplex | Heteromer | 2 / 0 / 0 / 0 | Consistent with protein count |
| 5 | Protein heterocomplex | Heteromer | 2 / 0 / 0 / 0 | Consistent with protein count |
| 6 | Protein heterocomplex | Heteromer | 2 / 0 / 0 / 0 | Consistent with protein count |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
2. Structure Basics 2. Structure Basics
| Entry ID entry_id | 3gyx |
| Deposition date deposition_date | 2009-04-06 |
| Structure title title | Crystal structure of adenylylsulfate reductase from Desulfovibrio gigas |
| Keywords keywords | Adenylylsulfate Reductase, OXIDOREDUCTASE; OXIDOREDUCTASE |
| Experimental Method method | X-RAY DIFFRACTION |
3. Official assembly/model SAXS Official SAXS Profiles
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
3gyx__assembly_6__model_1
Assembly 6 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
3gyx__assembly_6__model_1 | I(q)
3gyx__assembly_6__model_1 | P(r) · Pending
| Rg（Guinier） | 27.10 Å |
| Rg (electron density) | 26.05 Å |
| Total Rg | 26.89 Å |
| Atom count | 6578 |
| Residues | 828 |
| Excluded volume | 116770 ų |
| Maximum q | 0.500 Å⁻¹ |
| Assembly | Model | Structure unit | Oligomeric description | Status | CRYSOL | Actions |
|---|---|---|---|---|---|---|
| 1 | 1 | 3gyx__assembly_1__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 2 | 1 | 3gyx__assembly_2__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 3 | 1 | 3gyx__assembly_3__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 4 | 1 | 3gyx__assembly_4__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 5 | 1 | 3gyx__assembly_5__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 6 | 1 | 3gyx__assembly_6__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
4. Crystallography and Experiment 4. Crystallography & Experiment
5. Entities and Polymers Entities & Polymers (5)
6. Fold Classification (SCOP + CATH) 24 domains
CATH v4.4 (24 domains)
| Domain ID domain_id | 3gyxA01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 3gyxA02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| Domain ID domain_id | 3gyxB01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 70 — Alpha-Beta Plaits |
| Homologous superfamily homologous superfamily | 20 — |
| Domain ID domain_id | 3gyxB02 |
| Class class | 6 — Special |
| Architecture architecture | 20 — Other non-globular |
| Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| Homologous superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| Domain ID domain_id | 3gyxC01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 3gyxC02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| Domain ID domain_id | 3gyxD01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 70 — Alpha-Beta Plaits |
| Homologous superfamily homologous superfamily | 20 — |
| Domain ID domain_id | 3gyxD02 |
| Class class | 6 — Special |
| Architecture architecture | 20 — Other non-globular |
| Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| Homologous superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| Domain ID domain_id | 3gyxE01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 3gyxE02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| Domain ID domain_id | 3gyxF01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 70 — Alpha-Beta Plaits |
| Homologous superfamily homologous superfamily | 20 — |
| Domain ID domain_id | 3gyxF02 |
| Class class | 6 — Special |
| Architecture architecture | 20 — Other non-globular |
| Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| Homologous superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| Domain ID domain_id | 3gyxG01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 3gyxG02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| Domain ID domain_id | 3gyxH01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 70 — Alpha-Beta Plaits |
| Homologous superfamily homologous superfamily | 20 — |
| Domain ID domain_id | 3gyxH02 |
| Class class | 6 — Special |
| Architecture architecture | 20 — Other non-globular |
| Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| Homologous superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| Domain ID domain_id | 3gyxI01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 3gyxI02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| Domain ID domain_id | 3gyxJ01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 70 — Alpha-Beta Plaits |
| Homologous superfamily homologous superfamily | 20 — |
| Domain ID domain_id | 3gyxJ02 |
| Class class | 6 — Special |
| Architecture architecture | 20 — Other non-globular |
| Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| Homologous superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| Domain ID domain_id | 3gyxK01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 3gyxK02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| Domain ID domain_id | 3gyxL01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 70 — Alpha-Beta Plaits |
| Homologous superfamily homologous superfamily | 20 — |
| Domain ID domain_id | 3gyxL02 |
| Class class | 6 — Special |
| Architecture architecture | 20 — Other non-globular |
| Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| Homologous superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |