3gyx
Crystal structure of adenylylsulfate reductase from Desulfovibrio gigas
1. 蛋白身份与相关结构 Protein Identity & Related Structures
当前条目没有可用的 UniProt 蛋白身份。
七张关系表仍保留该条目的 assembly 与组成信息，但缺少统一蛋白身份时，不能可靠建立跨 PDB 的同蛋白链接。
当前条目的 assembly 组成
| Assembly | 物理组成 | 蛋白状态 | 蛋白 / DNA / RNA / 其他聚合物 | 数据核对 |
|---|---|---|---|---|
| 1 | 蛋白异源复合物 | 异源复合物 | 2 / 0 / 0 / 0 | 与蛋白数一致 |
| 2 | 蛋白异源复合物 | 异源复合物 | 2 / 0 / 0 / 0 | 与蛋白数一致 |
| 3 | 蛋白异源复合物 | 异源复合物 | 2 / 0 / 0 / 0 | 与蛋白数一致 |
| 4 | 蛋白异源复合物 | 异源复合物 | 2 / 0 / 0 / 0 | 与蛋白数一致 |
| 5 | 蛋白异源复合物 | 异源复合物 | 2 / 0 / 0 / 0 | 与蛋白数一致 |
| 6 | 蛋白异源复合物 | 异源复合物 | 2 / 0 / 0 / 0 | 与蛋白数一致 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
2. 结构基本信息 2. Structure Basics
| 条目编号 entry_id | 3gyx |
| 沉积日期 deposition_date | 2009-04-06 |
| 结构标题 title | Crystal structure of adenylylsulfate reductase from Desulfovibrio gigas |
| 关键词 keywords | Adenylylsulfate Reductase, OXIDOREDUCTASE; OXIDOREDUCTASE |
| 实验方法 method | X-RAY DIFFRACTION |
3. Official assembly/model 理论 SAXS Official SAXS Profiles
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
3gyx__assembly_3__model_1
Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
3gyx__assembly_3__model_1 | I(q)
3gyx__assembly_3__model_1 | P(r) · Pending
| Rg（Guinier） | 27.25 Å |
| Rg（电子密度） | 26.23 Å |
| 总 Rg | 27.05 Å |
| 原子数 | 6578 |
| 残基数 | 828 |
| 排除体积 | 116770 ų |
| 最大 q | 0.500 Å⁻¹ |
| Assembly | Model | 结构单元 | 聚集说明 | 状态 | CRYSOL | 操作 |
|---|---|---|---|---|---|---|
| 1 | 1 | 3gyx__assembly_1__model_1 |
dimeric （2） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 2 | 1 | 3gyx__assembly_2__model_1 |
dimeric （2） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 3 | 1 | 3gyx__assembly_3__model_1 |
dimeric （2） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 4 | 1 | 3gyx__assembly_4__model_1 |
dimeric （2） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 5 | 1 | 3gyx__assembly_5__model_1 |
dimeric （2） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
| 6 | 1 | 3gyx__assembly_6__model_1 |
dimeric （2） | 成功 | 4.1.3-1-20251215 (887e7ef) | 查看 下载 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合物信息 Entities & Polymers (5)
6. 折叠分类 (SCOP + CATH) 24 domains
CATH v4.4 (24 domains)
| 结构域编号 domain_id | 3gyxA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| 拓扑 Topology topology | 50 — FAD/NAD(P)-binding domain |
| 同源超家族 H-superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| 结构域编号 domain_id | 3gyxA02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| 结构域编号 domain_id | 3gyxB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3gyxB02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| 结构域编号 domain_id | 3gyxC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| 拓扑 Topology topology | 50 — FAD/NAD(P)-binding domain |
| 同源超家族 H-superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| 结构域编号 domain_id | 3gyxC02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| 结构域编号 domain_id | 3gyxD01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3gyxD02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| 结构域编号 domain_id | 3gyxE01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| 拓扑 Topology topology | 50 — FAD/NAD(P)-binding domain |
| 同源超家族 H-superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| 结构域编号 domain_id | 3gyxE02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| 结构域编号 domain_id | 3gyxF01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3gyxF02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| 结构域编号 domain_id | 3gyxG01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| 拓扑 Topology topology | 50 — FAD/NAD(P)-binding domain |
| 同源超家族 H-superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| 结构域编号 domain_id | 3gyxG02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| 结构域编号 domain_id | 3gyxH01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3gyxH02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| 结构域编号 domain_id | 3gyxI01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| 拓扑 Topology topology | 50 — FAD/NAD(P)-binding domain |
| 同源超家族 H-superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| 结构域编号 domain_id | 3gyxI02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| 结构域编号 domain_id | 3gyxJ01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3gyxJ02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |
| 结构域编号 domain_id | 3gyxK01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| 拓扑 Topology topology | 50 — FAD/NAD(P)-binding domain |
| 同源超家族 H-superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| 结构域编号 domain_id | 3gyxK02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 700 — Flavocytochrome C3; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| 结构域编号 domain_id | 3gyxL01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 20 — |
| 结构域编号 domain_id | 3gyxL02 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 20 — Other non-globular |
| 拓扑 Topology topology | 260 — Signal recognition particle alu RNA binding heterodimer, srp9/1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenylylsulphate reductase, beta subunit, C-terminal domain |