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3jaz

Atomic model of cytoplasmic polyhedrosis virus with ATP

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Structural protein VP3

OrganismNot specified

UniProt Q914N6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 300 Capsid protein VP1 × 120 （Q6TS43） Viral structural protein 5 × 120 （C6K2M8） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 5 Capsid protein VP1 × 2 （Q6TS43） Viral structural protein 5 × 2 （C6K2M8） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 25 Capsid protein VP1 × 10 （Q6TS43） Viral structural protein 5 × 10 （C6K2M8） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 30 Capsid protein VP1 × 12 （Q6TS43） Viral structural protein 5 × 12 （C6K2M8） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 5 Capsid protein VP1 × 2 （Q6TS43） Viral structural protein 5 × 2 （C6K2M8） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer
7whp

1 assemblies

Homotetramer

None

Other homooligomers
3j6q

1 assemblies

Heteromeric or nucleic-acid complex
3iz3 3iz3 3iz3 3iz3 3iz3 3izx 3izx 3izx 3izx 3izx 3j17 3j17

45 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q914N6_CPVBM
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–1058； UniProt 1–1058

Capsid protein VP1

OrganismNot specified

UniProt Q6TS43

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 300 Structural protein VP3 × 60 （Q914N6） Viral structural protein 5 × 120 （C6K2M8） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 5 Structural protein VP3 × 1 （Q914N6） Viral structural protein 5 × 2 （C6K2M8） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 25 Structural protein VP3 × 5 （Q914N6） Viral structural protein 5 × 10 （C6K2M8） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 30 Structural protein VP3 × 6 （Q914N6） Viral structural protein 5 × 12 （C6K2M8） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 5 Structural protein VP3 × 1 （Q914N6） Viral structural protein 5 × 2 （C6K2M8） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
3cnf 3cnf 3cnf 3cnf 3cnf 3izx 3izx 3izx 3izx 3izx 3jay 3jay

40 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name CAPSD_CPVBM
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B； PDBConstruct 1–1333； UniProt 1–1333 Author chain C； PDBConstruct 1–1333； UniProt 1–1333

Viral structural protein 5

OrganismNot specified

UniProt C6K2M8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 300 Structural protein VP3 × 60 （Q914N6） Capsid protein VP1 × 120 （Q6TS43） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 5 Structural protein VP3 × 1 （Q914N6） Capsid protein VP1 × 2 （Q6TS43） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 25 Structural protein VP3 × 5 （Q914N6） Capsid protein VP1 × 10 （Q6TS43） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 30 Structural protein VP3 × 6 （Q914N6） Capsid protein VP1 × 12 （Q6TS43） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 5 Structural protein VP3 × 1 （Q914N6） Capsid protein VP1 × 2 （Q6TS43） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
3iz3 3iz3 3iz3 3iz3 3iz3 3izx 3izx 3izx 3izx 3izx 3j17 3j17

45 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name C6K2M8_CPVBM
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D； PDBConstruct 1–448； UniProt 1–448 Author chain E； PDBConstruct 1–448； UniProt 1–448

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3jaz
Deposition date deposition_date2015-07-06
Structure title titleAtomic model of cytoplasmic polyhedrosis virus with ATP
Keywords keywordsviral ATPase, histidine-mediated guanylyl transfer, conformational changes, regulation of transcription, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3jaz__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3jaz__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3jaz__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)278.20 Å
Total Rg278.30 Å
Atom count1934640
Residues244920
Excluded volume34403000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3jaz__assembly_1__model_1 300-MERIC （300） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 3jaz__assembly_2__model_1 pentameric （5） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 3jaz__assembly_3__model_1 25-meric （25） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 3jaz__assembly_4__model_1 30-meric （30） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 3jaz__assembly_5__model_1 pentameric （5） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)