3re8

Structural and Kinetic Analysis of the Beef liver Catalase interacting with Nitric Oxide

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Catalase

物种未注明

UniProt P00432

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 4 PROTOPORPHYRIN IX CONTAINING FE × 4 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CATA_BOVIN
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–499; UniProt 4–502 作者链 B; PDB构建体 1–499; UniProt 4–502 作者链 C; PDB构建体 1–499; UniProt 4–502 作者链 D; PDB构建体 1–499; UniProt 4–502

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id3re8
沉积日期 deposition_date2011-04-03
结构标题 titleStructural and Kinetic Analysis of the Beef liver Catalase interacting with Nitric Oxide
关键词 keywordsThe 5-coordinated heme Protein, Disproportionation of the hydrogen peroxide, Oxidoreducatase, OXIDOREDUCTASE; OXIDOREDUCTASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3re8__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3re8__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

3re8__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)36.42 Å
Rg(电子密度)35.74 Å
总 Rg36.30 Å
原子数16240
残基数1996
排除体积285410 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 3re8__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (3)

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6. 折叠分类 (SCOP + CATH) 16 domains

SCOP 2.08 (4 domains)

结构域编号 domain_idd3re8a_
类 Class classe — Multi-domain proteins (alpha and beta)
折叠类型 Fold folde.5 — Heme-dependent catalase-like
超家族 Superfamily superfamilye.5.1 — Heme-dependent catalase-like
家族 Family familye.5.1.1 — Heme-dependent catalases
结构域编号 domain_idd3re8b_
类 Class classe — Multi-domain proteins (alpha and beta)
折叠类型 Fold folde.5 — Heme-dependent catalase-like
超家族 Superfamily superfamilye.5.1 — Heme-dependent catalase-like
家族 Family familye.5.1.1 — Heme-dependent catalases
结构域编号 domain_idd3re8c_
类 Class classe — Multi-domain proteins (alpha and beta)
折叠类型 Fold folde.5 — Heme-dependent catalase-like
超家族 Superfamily superfamilye.5.1 — Heme-dependent catalase-like
家族 Family familye.5.1.1 — Heme-dependent catalases
结构域编号 domain_idd3re8d_
类 Class classe — Multi-domain proteins (alpha and beta)
折叠类型 Fold folde.5 — Heme-dependent catalase-like
超家族 Superfamily superfamilye.5.1 — Heme-dependent catalase-like
家族 Family familye.5.1.1 — Heme-dependent catalases

CATH v4.4 (12 domains)

结构域编号 domain_id3re8A01
类 Class class4 — Few Secondary Structures
架构 Architecture architecture10 — Irregular
拓扑 Topology topology91 — Cytochrome C Oxidase; Chain J
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3re8A02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology180 — Catalase HpII, Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Catalase core domain
结构域编号 domain_id3re8A03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1370 — Hemocyanin, N-terminal domain
同源超家族 H-superfamily homologous superfamily60 —
结构域编号 domain_id3re8B01
类 Class class4 — Few Secondary Structures
架构 Architecture architecture10 — Irregular
拓扑 Topology topology91 — Cytochrome C Oxidase; Chain J
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3re8B02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology180 — Catalase HpII, Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Catalase core domain
结构域编号 domain_id3re8B03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1370 — Hemocyanin, N-terminal domain
同源超家族 H-superfamily homologous superfamily60 —
结构域编号 domain_id3re8C01
类 Class class4 — Few Secondary Structures
架构 Architecture architecture10 — Irregular
拓扑 Topology topology91 — Cytochrome C Oxidase; Chain J
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3re8C02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology180 — Catalase HpII, Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Catalase core domain
结构域编号 domain_id3re8C03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1370 — Hemocyanin, N-terminal domain
同源超家族 H-superfamily homologous superfamily60 —
结构域编号 domain_id3re8D01
类 Class class4 — Few Secondary Structures
架构 Architecture architecture10 — Irregular
拓扑 Topology topology91 — Cytochrome C Oxidase; Chain J
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id3re8D02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology180 — Catalase HpII, Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Catalase core domain
结构域编号 domain_id3re8D03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1370 — Hemocyanin, N-terminal domain
同源超家族 H-superfamily homologous superfamily60 —
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7. 引用文献 (1)