3seq

Crystal structure of C176A mutant of glutamine-dependent NAD+ synthetase from M. tuberculosis in complex with AMPCPP and NaAD+

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Glutamine-dependent NAD(+) synthetase

Mycobacterium tuberculosis

UniProt P0A5L6

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 8 DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER × 8 NICOTINIC ACID ADENINE DINUCLEOTIDE × 8 GLYCEROL × 4 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 NADE_MYCTU
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 2–680; UniProt 1–679 作者链 B; PDB构建体 2–680; UniProt 1–679 作者链 C; PDB构建体 2–680; UniProt 1–679 作者链 D; PDB构建体 2–680; UniProt 1–679

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id3seq
沉积日期 deposition_date2011-06-10
结构标题 titleCrystal structure of C176A mutant of glutamine-dependent NAD+ synthetase from M. tuberculosis in complex with AMPCPP and NaAD+
关键词 keywords;Glutamine-amidotransferase, Glutaminase, Glutamine-dependent NAD+ synthetase, Ligase, Ammonia tunneling, ATP binding, NAD, Nucleotide binding ;; LIGASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3seq__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3seq__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

3seq__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)55.03 Å
Rg(电子密度)54.70 Å
总 Rg54.85 Å
原子数40942
残基数5238
排除体积722010 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 3seq__assembly_1__model_1 octameric (8) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (5)

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6. 折叠分类 (SCOP + CATH) 12 domains

CATH v4.4 (12 domains)

结构域编号 domain_id3seqA01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology110 — Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase
同源超家族 H-superfamily homologous superfamily10 — Carbon-nitrogen hydrolase
结构域编号 domain_id3seqA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily620 — HUPs
结构域编号 domain_id3seqA03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily1140 — Glutamine-dependent NAD+ synthetase, C-terminal domain
结构域编号 domain_id3seqB01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology110 — Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase
同源超家族 H-superfamily homologous superfamily10 — Carbon-nitrogen hydrolase
结构域编号 domain_id3seqB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily620 — HUPs
结构域编号 domain_id3seqB03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily1140 — Glutamine-dependent NAD+ synthetase, C-terminal domain
结构域编号 domain_id3seqC01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology110 — Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase
同源超家族 H-superfamily homologous superfamily10 — Carbon-nitrogen hydrolase
结构域编号 domain_id3seqC02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily620 — HUPs
结构域编号 domain_id3seqC03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily1140 — Glutamine-dependent NAD+ synthetase, C-terminal domain
结构域编号 domain_id3seqD01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology110 — Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase
同源超家族 H-superfamily homologous superfamily10 — Carbon-nitrogen hydrolase
结构域编号 domain_id3seqD02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily620 — HUPs
结构域编号 domain_id3seqD03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily1140 — Glutamine-dependent NAD+ synthetase, C-terminal domain
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7. 引用文献 (1)