3wuu

Structure basis of inactivating cell abscission with chimera peptide 1

Method: X-RAY DIFFRACTION Dmax: 98.1 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Centrosomal protein of 55 kDa

Homo sapiens

UniProt Q53EZ4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain A; UniProt 160–217 Chain B; UniProt 160–217 Fragment:UNP residues 160-217 TEX-14 × 1 (Q8IWB6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260
2 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain D; UniProt 160–217 Chain E; UniProt 160–217 Fragment:UNP residues 160-217 TEX-14 × 1 (Q8IWB6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260
3 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain G; UniProt 160–217 Chain H; UniProt 160–217 Fragment:UNP residues 160-217 TEX-14 × 1 (Q8IWB6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260
4 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain J; UniProt 160–217 Chain K; UniProt 160–217 Fragment:UNP residues 160-217 TEX-14 × 1 (Q8IWB6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 11 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CEP55_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 6–63; UniProt 160–217 Author chain B; PDBConstruct 6–63; UniProt 160–217 Author chain D; PDBConstruct 6–63; UniProt 160–217 Author chain E; PDBConstruct 6–63; UniProt 160–217 Author chain G; PDBConstruct 6–63; UniProt 160–217 Author chain H; PDBConstruct 6–63; UniProt 160–217 Author chain J; PDBConstruct 6–63; UniProt 160–217 Author chain K; PDBConstruct 6–63; UniProt 160–217

TEX-14

OrganismNot specified

UniProt Q8IWB6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain C; UniProt 791–804 Mutation:P791D/I802P/P803G/P804Y Centrosomal protein of 55 kDa × 2 (Q53EZ4) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260
2 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain F; UniProt 791–804 Mutation:P791D/I802P/P803G/P804Y Centrosomal protein of 55 kDa × 2 (Q53EZ4) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260
3 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain L; UniProt 791–804 Mutation:P791D/I802P/P803G/P804Y Centrosomal protein of 55 kDa × 2 (Q53EZ4) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260
4 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain I; UniProt 791–804 Mutation:P791D/I802P/P803G/P804Y Centrosomal protein of 55 kDa × 2 (Q53EZ4) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;20%(w/v) polyacrylic acid 5100, 0.2M magnesium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K Resolution 2.90 Å R-free 0.260

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TEX14_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–14; UniProt 791–804 Author chain F; PDBConstruct 1–14; UniProt 791–804 Author chain I; PDBConstruct 1–14; UniProt 791–804 Author chain L; PDBConstruct 1–14; UniProt 791–804

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3wuu

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3wuu
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3wuu
Deposition date deposition_date2014-05-05
Structure title titleStructure basis of inactivating cell abscission with chimera peptide 1
Keywords keywordsCoiled-coil, CELL CYCLE; CELL CYCLE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier29.96
Radius of gyration Rg (electron density) rg_electron29.09
Forward intensity I(0) i042958000.00
Molecular weight molecular_weight52602.0 kDa
Excluded volume excluded_volume66633 ų
Envelope volume envelope_volume92396 ų
Hydration-shell volume shell_volume27883 ų
Envelope diameter envelope_diameter103.6
Shell Rg shell_rg34.23
Envelope Rg envelope_rg29.59
Shape Rg shape_rg29.02
Total Rg total_rg29.92
Total atoms total_atoms3713
Residues n_residues447
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax98.1
Rg (real space) rg_real29.92
Rg uncertainty (real space) rg_real_error0.76
I(0) (real space) i0_real4.2960e+07
I(0) uncertainty (real space) i0_real_error6.7180e+05
Rg (reciprocal space) rg_reciprocal29.94
I(0) (reciprocal space) i0_reciprocal42960000.0000
Solution quality estimate total_estimate0.9068
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary38.9
Skewness Skewness skewness0.185
Kurtosis Kurtosis kurtosis-0.508
Angular range angular_range— – 0.2650 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2598000.0000
Real-space data points n_real_points54
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.939; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.980

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 8 domains

CATH v4.4 (8 domains)

Domain ID domain_id3wuuA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain
Domain ID domain_id3wuuB00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain
Domain ID domain_id3wuuD00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain
Domain ID domain_id3wuuE00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain
Domain ID domain_id3wuuG00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain
Domain ID domain_id3wuuH00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain
Domain ID domain_id3wuuJ00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain
Domain ID domain_id3wuuK00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily1180 — Geminin coiled-coil domain

8. Citations (1)

9. Files and Curves (10)