4c5s

Structural Investigations into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus chinensis

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

PHENYLALANINE AMMONIA-LYASE

TAXUS WALLICHIANA VAR. CHINENSIS

UniProt Q68G84

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 4 (3S)-3-amino-2,2-difluoro-3-phenylpropanoic acid × 4 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q68G84_TAXWC
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 21–705; UniProt 1–687 作者链 B; PDB构建体 21–705; UniProt 1–687 作者链 C; PDB构建体 21–705; UniProt 1–687 作者链 D; PDB构建体 21–705; UniProt 1–687

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id4c5s
沉积日期 deposition_date2013-09-16
结构标题 titleStructural Investigations into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus chinensis
关键词 keywordsLYASE, (R)-BETA-PHENYLALANINE ANALOGUE, METHYLIDENE-IMIDAZOLE-5-ONE, Y80A; LYASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

4c5s__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

4c5s__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

4c5s__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)40.87 Å
Rg(电子密度)40.16 Å
总 Rg40.63 Å
原子数19932
残基数2559
排除体积357010 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 4c5s__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (3)

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6. 折叠分类 (SCOP + CATH) 16 domains

SCOP 2.08 (4 domains)

结构域编号 domain_idd4c5sa_
类 Class classa — All alpha proteins
折叠类型 Fold folda.127 — L-aspartase-like
超家族 Superfamily superfamilya.127.1 — L-aspartase-like
家族 Family familya.127.1.0 — automated matches
结构域编号 domain_idd4c5sb_
类 Class classa — All alpha proteins
折叠类型 Fold folda.127 — L-aspartase-like
超家族 Superfamily superfamilya.127.1 — L-aspartase-like
家族 Family familya.127.1.0 — automated matches
结构域编号 domain_idd4c5sc_
类 Class classa — All alpha proteins
折叠类型 Fold folda.127 — L-aspartase-like
超家族 Superfamily superfamilya.127.1 — L-aspartase-like
家族 Family familya.127.1.0 — automated matches
结构域编号 domain_idd4c5sd_
类 Class classa — All alpha proteins
折叠类型 Fold folda.127 — L-aspartase-like
超家族 Superfamily superfamilya.127.1 — L-aspartase-like
家族 Family familya.127.1.0 — automated matches

CATH v4.4 (12 domains)

结构域编号 domain_id4c5sA01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology275 — Fumarase C; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (N-terminal domain)
结构域编号 domain_id4c5sA02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology200 — Fumarase C; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (Central domain)
结构域编号 domain_id4c5sA03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology274 — Enzyme I; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily20 — Phenylalanine ammonia-lyase 1; domain 3
结构域编号 domain_id4c5sB01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology275 — Fumarase C; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (N-terminal domain)
结构域编号 domain_id4c5sB02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology200 — Fumarase C; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (Central domain)
结构域编号 domain_id4c5sB03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology274 — Enzyme I; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily20 — Phenylalanine ammonia-lyase 1; domain 3
结构域编号 domain_id4c5sC01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology275 — Fumarase C; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (N-terminal domain)
结构域编号 domain_id4c5sC02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology200 — Fumarase C; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (Central domain)
结构域编号 domain_id4c5sC03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology274 — Enzyme I; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily20 — Phenylalanine ammonia-lyase 1; domain 3
结构域编号 domain_id4c5sD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology275 — Fumarase C; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (N-terminal domain)
结构域编号 domain_id4c5sD02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology200 — Fumarase C; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Fumarase/aspartase (Central domain)
结构域编号 domain_id4c5sD03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology274 — Enzyme I; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily20 — Phenylalanine ammonia-lyase 1; domain 3
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7. 引用文献 (1)