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4d1q

Hermes transposase bound to its terminal inverted repeat

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

TRANSPOSASE

MUSCA DOMESTICA

UniProt Q25442

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Homooligomer Protein 8 DNA 16 TERMINAL INVERTED REPEAT × 8 TERMINAL INVERTED REPEAT × 8 SODIUM ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer
2bw3

1 assemblies

Other homooligomers

None

Heteromeric or nucleic-acid complex
4d1q 8eb5

2 assemblies

View Construct and Data Evidence
UniProt name Q25442_MUSDO
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 3–536； UniProt 79–612 Author chain B； PDBConstruct 3–536； UniProt 79–612 Author chain G； PDBConstruct 3–536； UniProt 79–612 Author chain H； PDBConstruct 3–536； UniProt 79–612

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4d1q
Deposition date deposition_date2014-05-04
Structure title titleHermes transposase bound to its terminal inverted repeat
Keywords keywordsTRANSPOSITION, PROTEIN-DNA COMPLEX, TRANPOSOSOME, HAT; PROTEIN-DNA COMPLEX
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4d1q__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4d1q__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4d1q__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）70.89 Å
Rg (electron density)71.76 Å
Total Rg71.75 Å
Atom count37474
Residues4278
Excluded volume656980 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4d1q__assembly_1__model_1 24-meric （24） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id4d1qA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily1070 — Zinc finger, BED domain-containing
Domain ID domain_id4d1qB01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily1070 — Zinc finger, BED domain-containing
Domain ID domain_id4d1qG01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily1070 — Zinc finger, BED domain-containing
Domain ID domain_id4d1qH01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily1070 — Zinc finger, BED domain-containing
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7. Citations (1)