SAXSdb — 4fx7

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Imidazole glycerol phosphate synthase subunit HisF

Thermotoga maritima

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein monomer	Monomer	Protein 1	HYDROGENPHOSPHATE ION × 2 water × 1	Consistent with protein count
2	Protein monomer	Monomer	Protein 1	HYDROGENPHOSPHATE ION × 2 water × 1	Consistent with protein count
3	Protein monomer	Monomer	Protein 1	HYDROGENPHOSPHATE ION × 2 water × 1	Consistent with protein count
4	Protein monomer	Monomer	Protein 1	HYDROGENPHOSPHATE ION × 2 water × 1	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	HIS6_THEMA
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 2–98； UniProt 123–219 Author chain A； PDBConstruct 99–219； UniProt 99–219 Author chain A； PDBConstruct 220–243； UniProt 99–122 Author chain B； PDBConstruct 2–98； UniProt 123–219 Author chain B； PDBConstruct 99–219； UniProt 99–219 Author chain B； PDBConstruct 220–243； UniProt 99–122 Author chain C； PDBConstruct 2–98； UniProt 123–219 Author chain C； PDBConstruct 99–219； UniProt 99–219 Author chain C； PDBConstruct 220–243； UniProt 99–122 Author chain D； PDBConstruct 2–98； UniProt 123–219 Author chain D； PDBConstruct 99–219； UniProt 99–219 Author chain D； PDBConstruct 220–243； UniProt 99–122

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	4fx7
Deposition date deposition_date	2012-07-02
Structure title title	Structure of Sym2 D9V+D55V+D130V+D176V
Keywords keywords	FUSION PROTEIN, TIM Barrel, DE NOVO PROTEIN, LYASE; LYASE
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4fx7__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4fx7__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

4fx7__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	17.83 Å
Rg (electron density)	16.69 Å
Total Rg	17.69 Å
Atom count	1819
Residues	240
Excluded volume	32712 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`4fx7__assembly_1__model_1`	monomeric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`4fx7__assembly_2__model_1`	monomeric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download
3	1	`4fx7__assembly_3__model_1`	monomeric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download
4	1	`4fx7__assembly_4__model_1`	monomeric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Description description	Imidazole glycerol phosphate synthase subunit HisF
Molecular weight formula_weight	27252.4 kDa
EC 编号 ec_number	4.1.3.-
Mutation mutation	A3R, D9V, Y22H, D55V, D130V, Y143H, D176V
Source method src_method	man
Copy count entity_count	4

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D
Atom count atom_count	7577

MQRVVVAIVAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRVGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIVAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRVGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKVSINTAAVENPSLITQIAQTFGSLEHHHHHH

Source Source

Source organism organism	Thermotoga maritima
NCBI taxonomy ID ncbi_taxonomy_id	243274
Host organism host_organism	Escherichia coli

Entity 2 Entity 2 non-polymer

Description description	HYDROGENPHOSPHATE ION
Molecular weight formula_weight	96.0 kDa
Source method src_method	syn
Copy count entity_count	8

Entity 3 Entity 3 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	348

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6. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id	4fx7A00
Class class	3 — Alpha Beta
Architecture architecture	20 — Alpha-Beta Barrel
Topology topology	20 — TIM Barrel
Homologous superfamily homologous superfamily	70 — Aldolase class I

Domain ID domain_id	4fx7B00
Class class	3 — Alpha Beta
Architecture architecture	20 — Alpha-Beta Barrel
Topology topology	20 — TIM Barrel
Homologous superfamily homologous superfamily	70 — Aldolase class I

Domain ID domain_id	4fx7C00
Class class	3 — Alpha Beta
Architecture architecture	20 — Alpha-Beta Barrel
Topology topology	20 — TIM Barrel
Homologous superfamily homologous superfamily	70 — Aldolase class I

Domain ID domain_id	4fx7D00
Class class	3 — Alpha Beta
Architecture architecture	20 — Alpha-Beta Barrel
Topology topology	20 — TIM Barrel
Homologous superfamily homologous superfamily	70 — Aldolase class I

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Unit-cell length a length_a	66.616 Å
Unit-cell length b length_b	83.265 Å
Unit-cell length c length_c	80.154 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	102.66 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	8

Space group space_group	P 1 21 1
Space-group number int_tables_number	4
Crystal system crystal_system	—

Resolution resolution	2.076 Å
Low-resolution limit resolution_low	46.716 Å
R factor r_factor	0.1747
R_work r_work	0.1717
R_free r_free	0.2329

Structure of Sym2 D9V+D55V+D130V+D176V

1. Protein Identity and Related Structures Protein Identity & Related Structures

Imidazole glycerol phosphate synthase subunit HisF

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

4fx7__assembly_1__model_1

4fx7__assembly_1__model_1 | I(q)

4fx7__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

Entity 3 Entity 3 water

6. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

7. Citations (1)

Structure of Sym2 D9V+D55V+D130V+D176V

1. Protein Identity and Related Structures Protein Identity & Related Structures

Imidazole glycerol phosphate synthase subunit HisF

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

4fx7__assembly_1__model_1

4fx7__assembly_1__model_1 | I(q)

4fx7__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

Entity 3 Entity 3 water

6. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

7. Citations (1)